| SRR4457249 | 2nd_leaf | DAH4 | 1.84 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 2.59 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 2.77 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 1.29 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 1.74 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 1.45 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 2.17 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 1.30 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 1.83 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 2.40 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 1.85 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 1.61 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 2.98 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 2.89 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 1.36 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 2.92 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 1.80 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 4.33 | MC |
| SRR3745125 | anther | wt | 0.75 | MC |
| SRR3745126 | anther | wt | 0.82 | MC |
| SRR3745127 | anther | wt | 0.56 | MC |
| SRR358795 | callus | wt | 7.73 | MC |
| SRR358796 | callus | wt | 4.76 | MC |
| SRR358797 | callus | wt | 6.15 | MC |
| SRR358798 | callus | wt | 5.63 | MC |
| SRR5560727 | caryopsis | wild_type | 1.37 | MC |
| SRR5560728 | caryopsis | wild_type | 2.11 | MC |
| SRR5560729 | caryopsis | wild_type | 2.29 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 1.61 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 2.30 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.93 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.95 | MC |
| SRR2338866 | endosprem | control | 2.42 | MC |
| SRR2338867 | endosprem | control | 0.48 | MC |
| SRR2338868 | endosprem | high_temperature | 2.26 | MC |
| SRR2338869 | endosprem | high_temperature | 1.34 | MC |
| SRR4457231 | flag_leaf | DAH4 | 1.13 | MC |
| SRR4457232 | flag_leaf | DAH4 | 1.86 | MC |
| SRR4457233 | flag_leaf | DAH4 | 2.13 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.77 | MC |
| SRR4457235 | flag_leaf | DAH12 | 0.84 | MC |
| SRR4457236 | flag_leaf | DAH12 | 0.71 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.88 | MC |
| SRR4457238 | flag_leaf | DAH20 | 1.22 | MC |
| SRR4457239 | flag_leaf | DAH20 | 0.84 | MC |
| SRR4457240 | flag_leaf | DAH28 | 0.87 | MC |
| SRR4457241 | flag_leaf | DAH28 | 1.31 | MC |
| SRR4457242 | flag_leaf | DAH28 | 2.22 | MC |
| SRR4457243 | flag_leaf | DAH36 | 2.24 | MC |
| SRR4457244 | flag_leaf | DAH36 | 1.05 | MC |
| SRR4457245 | flag_leaf | DAH36 | 1.52 | MC |
| SRR4457246 | flag_leaf | DAH44 | 3.20 | MC |
| SRR4457247 | flag_leaf | DAH44 | 2.20 | MC |
| SRR4457248 | flag_leaf | DAH44 | 2.73 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 1.85 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 1.72 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 1.06 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 2.04 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 5.68 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 8.11 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 5.43 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 5.45 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 4.75 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 4.14 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 6.84 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 6.02 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 5.22 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 4.96 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 5.16 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 5.22 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 4.96 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 5.16 | MC |
| SRR1761529 | leaf | drought | 5.22 | MC |
| SRR1761530 | leaf | control | 4.96 | MC |
| SRR1761531 | leaf | control | 5.16 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.61 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.10 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 3.23 | MC |
| SRR6417967 | leaf | H2O_control | 1.66 | MC |
| SRR6417968 | leaf | H2O_control | 1.88 | MC |
| SRR6417969 | leaf | H2O_control | 1.41 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 2.30 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 2.01 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 3.52 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 2.21 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 3.01 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 1.60 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 3.66 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 2.21 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 4.52 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.41 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.36 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.25 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.46 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 2.38 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 2.06 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 4.35 | MC |
| SRR8582888 | panicle | AM | 2.01 | MC |
| SRR8582889 | panicle | AM | 0.77 | MC |
| SRR8582890 | panicle | AM | 2.13 | MC |
| SRR8582891 | panicle | PM | 3.61 | MC |
| SRR8582892 | panicle | PM | 4.41 | MC |
| SRR8582893 | panicle | PM | 3.20 | MC |
| SRR5110429 | panicle | Dawn | 0.48 | MC |
| SRR5110430 | panicle | Dawn | 0.91 | MC |
| SRR5110431 | panicle | Dawn | 0.34 | MC |
| SRR5110432 | panicle | Dawn | 0.42 | MC |
| SRR5110438 | panicle | Dawn + 7h | 0.41 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 0.61 | MC |
| SRR5110447 | panicle | Dusk | 0.94 | MC |
| SRR5110450 | panicle | Dawn + 14h | 0.86 | MC |
| SRR5110452 | panicle | Dawn + 14h | 0.56 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.66 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 0.36 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 0.51 | MC |
| SRR5110460 | panicle | Dawn + 21h | 0.88 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 1.24 | MC |
| SRR5126147 | root | "mock,1_day" | 3.32 | MC |
| SRR5126148 | root | "mock,1_day" | 2.59 | MC |
| SRR5126149 | root | "mock,1_day" | 4.08 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 2.48 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 4.09 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 2.80 | MC |
| SRR5126153 | root | "mock,7_days" | 3.37 | MC |
| SRR5126155 | root | "mock,7_days" | 3.07 | MC |
| SRR5126157 | root | "mock,7_days" | 5.18 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 3.15 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 4.13 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 3.92 | MC |
| SRR5126165 | root | "mock,14_days" | 3.88 | MC |
| SRR5126167 | root | "mock,14_days" | 3.41 | MC |
| SRR5126169 | root | "mock,14_days" | 4.29 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 3.21 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 3.35 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 4.23 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.29 | MC |
| SRR1213694 | root | wt | 1.60 | MC |
| SRR1740434 | root_differentiation_zone | wt | 0.91 | MC |
| SRR1740435 | root_differentiation_zone | wt | 1.70 | MC |
| SRR1740436 | root_differentiation_zone | wt | 2.46 | MC |
| SRR1740431 | root_elongation_zone | wt | 1.95 | MC |
| SRR1740433 | root_elongation_zone | wt | 2.97 | MC |
| SRR1740428 | root_meristematic_zone | wt | 2.18 | MC |
| SRR1740429 | root_meristematic_zone | wt | 2.33 | MC |
| SRR1740430 | root_meristematic_zone | wt | 3.23 | MC |
| SRR6441554 | seedling | wild_type | 0.84 | MC |
| SRR6441555 | seedling | wild_type | 1.35 | MC |
| SRR2154086 | seedling | wt | 4.22 | MC |
| SRR3098741 | seedling | wt | 1.75 | MC |
| SRR3098742 | seedling | wt | 1.44 | MC |
| SRR3098743 | seedling | wt | 1.28 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 2.82 | MC |
| SRR1944583 | seedling | no_treatment | 2.00 | MC |
| SRR358791 | seedling | wt | 7.83 | MC |
| SRR358793 | seedling | wt | 4.82 | MC |
| SRR358794 | seedling | wt | 3.46 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 3.03 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 3.06 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.25 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 1.76 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 1.91 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 2.14 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 1.83 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 1.38 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 1.32 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 1.05 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 1.80 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 3.21 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 2.14 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 2.08 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.96 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 2.87 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 3.03 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 2.71 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 2.47 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.92 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 2.19 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 1.52 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 1.82 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.47 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.44 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.35 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.41 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.74 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 2.37 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.34 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.73 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 6.41 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 6.96 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 6.09 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 4.97 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 8.60 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 4.77 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 7.61 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 5.82 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 4.46 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 4.08 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 6.18 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 4.54 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 6.82 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 6.67 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 5.73 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 8.14 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 5.75 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 6.31 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 5.72 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 7.12 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 6.56 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 4.98 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 6.81 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 5.33 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 4.66 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 5.30 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 4.60 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 3.81 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 5.77 | MC |