| SRR4457249 | 2nd_leaf | DAH4 | 1.45 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 1.50 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 1.66 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 3.22 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 2.26 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 3.69 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 3.55 | MC |
| SRR3745125 | anther | wt | 5.38 | MC |
| SRR5560728 | caryopsis | wild_type | 0.59 | MC |
| SRR5560729 | caryopsis | wild_type | 0.66 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 2.59 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 1.67 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 1.61 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.80 | MC |
| SRR7265400 | coleoptile | 2dA | 0.27 | MC |
| SRR7265405 | coleoptile | 2dN | 0.29 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.39 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 0.47 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 1.43 | MC |
| SRR7265391 | embryo | 12hN | 0.93 | MC |
| SRR7265392 | embryo | 12hN | 1.34 | MC |
| SRR7265393 | embryo | 12hN | 0.79 | MC |
| SRR7265398 | embryo | 24hN | 0.44 | MC |
| SRR7265399 | embryo | 24hN | 1.00 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.97 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.74 | MC |
| SRR4457233 | flag_leaf | DAH4 | 1.47 | MC |
| SRR4457234 | flag_leaf | DAH12 | 1.86 | MC |
| SRR4457235 | flag_leaf | DAH12 | 0.65 | MC |
| SRR4457236 | flag_leaf | DAH12 | 1.93 | MC |
| SRR4457237 | flag_leaf | DAH20 | 2.01 | MC |
| SRR4457238 | flag_leaf | DAH20 | 2.72 | MC |
| SRR4457239 | flag_leaf | DAH20 | 2.16 | MC |
| SRR4457240 | flag_leaf | DAH28 | 2.62 | MC |
| SRR4457241 | flag_leaf | DAH28 | 2.10 | MC |
| SRR4457242 | flag_leaf | DAH28 | 2.66 | MC |
| SRR4457247 | flag_leaf | DAH44 | 4.69 | MC |
| SRR4457248 | flag_leaf | DAH44 | 5.82 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.77 | MC |
| SRR1213691 | flower | wt | 2.84 | MC |
| SRR8060836 | leaf | wild_type | 0.31 | MC |
| SRR8060837 | leaf | wild_type | 0.25 | MC |
| SRR8240824 | leaf | wild_type | 1.07 | MC |
| SRR8240825 | leaf | wild_type | 1.47 | MC |
| SRR8240826 | leaf | wild_type | 0.72 | MC |
| SRR8240819 | leaf | wild_type | 0.27 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 4.17 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.25 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.91 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.28 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.57 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.49 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.38 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.52 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 0.63 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 0.83 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 0.63 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 0.83 | MC |
| SRR1761530 | leaf | control | 0.63 | MC |
| SRR1761531 | leaf | control | 0.83 | MC |
| SRR504365 | leaf | wt | 2.21 | MC |
| SRR6417968 | leaf | H2O_control | 0.64 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 1.33 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 1.12 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 0.42 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.36 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 0.26 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.60 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.62 | MC |
| SRR8611901 | leaf | Non-inoculated | 1.23 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.77 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.35 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 1.29 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.63 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 1.60 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 1.66 | MC |
| SRR1213692 | leaf | wt | 0.68 | MC |
| SRR1213693 | leaf | wt | 1.12 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 0.45 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 0.43 | MC |
| SRR6502088 | leaf | control | 0.42 | MC |
| SRR6502089 | leaf | control | 0.41 | MC |
| SRR6502090 | leaf | control | 0.56 | MC |
| SRR6502100 | leaf | control | 0.73 | MC |
| SRR6502101 | leaf | control | 0.44 | MC |
| SRR6502102 | leaf | control | 0.38 | MC |
| SRR6168981 | leaf | none (control) | 0.88 | MC |
| SRR8582888 | panicle | AM | 0.66 | MC |
| SRR8582889 | panicle | AM | 0.48 | MC |
| SRR8582890 | panicle | AM | 0.36 | MC |
| SRR8582893 | panicle | PM | 0.56 | MC |
| SRR5110429 | panicle | Dawn | 0.54 | MC |
| SRR5110430 | panicle | Dawn | 1.15 | MC |
| SRR5110431 | panicle | Dawn | 1.17 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 1.49 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 2.70 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 1.34 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 0.89 | MC |
| SRR5110437 | panicle | Dawn + 7h | 1.25 | MC |
| SRR5110438 | panicle | Dawn + 7h | 1.87 | MC |
| SRR5110440 | panicle | Dawn + 7h | 0.69 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 2.30 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 1.16 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 0.71 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 1.27 | MC |
| SRR5110445 | panicle | Dusk | 1.43 | MC |
| SRR5110446 | panicle | Dusk | 1.31 | MC |
| SRR5110447 | panicle | Dusk | 1.96 | MC |
| SRR5110448 | panicle | Dusk | 1.45 | MC |
| SRR5110449 | panicle | Dawn + 14h | 2.87 | MC |
| SRR5110450 | panicle | Dawn + 14h | 0.64 | MC |
| SRR5110451 | panicle | Dawn + 14h | 1.47 | MC |
| SRR5110452 | panicle | Dawn + 14h | 0.53 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.53 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 0.45 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 0.93 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 0.76 | MC |
| SRR5110457 | panicle | Dawn + 21h | 0.88 | MC |
| SRR5110459 | panicle | Dawn + 21h | 0.81 | MC |
| SRR5110460 | panicle | Dawn + 21h | 0.78 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.18 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.50 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.71 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 1.11 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 1.41 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.43 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.48 | MC |
| SRR1213695 | root | wt | 0.89 | MC |
| SRR4947498 | root | Al | 0.69 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.36 | MC |
| SRR6502092 | root | 100 mM NaCl | 0.89 | MC |
| SRR1740434 | root_differentiation_zone | wt | 0.44 | MC |
| SRR6441554 | seedling | wild_type | 2.74 | MC |
| SRR6441555 | seedling | wild_type | 1.43 | MC |
| SRR2154086 | seedling | wt | 0.68 | MC |
| SRR2154085 | seedling | wt | 0.57 | MC |
| SRR2154087 | seedling | wt | 0.49 | MC |
| SRR3098741 | seedling | wt | 0.41 | MC |
| SRR3098742 | seedling | wt | 0.46 | MC |
| SRR3098743 | seedling | wt | 0.43 | MC |
| SRR2857720 | seedling | drought_stress_1h | 0.86 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 3.66 | MC |
| SRR1944583 | seedling | no_treatment | 3.37 | MC |
| SRR358791 | seedling | wt | 1.73 | MC |
| SRR358792 | seedling | wt | 0.63 | MC |
| SRR358793 | seedling | wt | 1.82 | MC |
| SRR358794 | seedling | wt | 1.73 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 3.04 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 3.52 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.01 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.78 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.24 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.94 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.52 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.30 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 1.24 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.77 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.60 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 1.31 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 1.79 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 1.08 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 0.74 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 1.53 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 1.94 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 1.47 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 1.82 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 2.85 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 2.01 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 1.19 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 1.32 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.69 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.73 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.84 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.70 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.91 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.97 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 3.41 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 2.54 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 0.88 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 1.07 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.77 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 0.53 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 0.62 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 0.65 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 1.29 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.64 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.75 | MC |