| SRR358795 | callus | wt | 1.39 | MC |
| SRR358797 | callus | wt | 3.35 | MC |
| SRR358798 | callus | wt | 2.67 | MC |
| SRR6320473 | carpel | wt | 3.18 | MC |
| SRR6320498 | carpel | wt | 1.30 | MC |
| SRR5560727 | caryopsis | wild_type | 4.96 | MC |
| SRR5560728 | caryopsis | wild_type | 3.79 | MC |
| SRR5560729 | caryopsis | wild_type | 2.99 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.77 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 1.08 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 1.64 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.50 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.59 | MC |
| SRR7265374 | embryo | dry seed 0 h | 0.82 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.37 | MC |
| SRR7265376 | embryo | 1hA | 1.39 | MC |
| SRR7265377 | embryo | 1hA | 1.74 | MC |
| SRR7265378 | embryo | 1hA | 2.09 | MC |
| SRR7265379 | embryo | 1hN | 1.26 | MC |
| SRR7265380 | embryo | 1hN | 1.35 | MC |
| SRR7265381 | embryo | 1hN | 1.11 | MC |
| SRR7265382 | embryo | 3hA | 2.21 | MC |
| SRR7265383 | embryo | 3hA | 1.54 | MC |
| SRR7265384 | embryo | 3hA | 1.23 | MC |
| SRR7265385 | embryo | 3hN | 1.04 | MC |
| SRR7265386 | embryo | 3hN | 0.89 | MC |
| SRR7265387 | embryo | 3hN | 1.68 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.57 | MC |
| SRR1213691 | flower | wt | 0.62 | MC |
| SRR8240824 | leaf | wild_type | 2.08 | MC |
| SRR8240825 | leaf | wild_type | 0.69 | MC |
| SRR8240826 | leaf | wild_type | 1.28 | MC |
| SRR8240819 | leaf | wild_type | 0.46 | MC |
| SRR8240820 | leaf | wild_type | 0.41 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.63 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 1.57 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 2.00 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 1.17 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.50 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.19 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.40 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 0.68 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.31 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.70 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.38 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.50 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 2.95 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 2.95 | MC |
| SRR1761528 | leaf | drought | 2.95 | MC |
| SRR504365 | leaf | wt | 0.35 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 2.39 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 2.35 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 3.48 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 1.10 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.36 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 3.44 | MC |
| SRR8611901 | leaf | Non-inoculated | 2.53 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.35 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.62 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.71 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 1.89 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 1.83 | MC |
| SRR1213692 | leaf | wt | 0.33 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 2.48 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 1.12 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 1.42 | MC |
| SRR6502088 | leaf | control | 0.82 | MC |
| SRR6502089 | leaf | control | 1.14 | MC |
| SRR6502090 | leaf | control | 1.38 | MC |
| SRR6502101 | leaf | control | 0.43 | MC |
| SRR5856935 | leaf | control | 0.25 | MC |
| SRR6168975 | leaf | none (control) | 0.44 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 0.54 | MC |
| SRR6168980 | leaf | none (control) | 0.87 | MC |
| SRR6168981 | leaf | none (control) | 0.66 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.84 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.70 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.51 | MC |
| SRR8582889 | panicle | AM | 0.36 | MC |
| SRR8582890 | panicle | AM | 0.33 | MC |
| SRR8582891 | panicle | PM | 1.75 | MC |
| SRR8582893 | panicle | PM | 2.66 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 0.41 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 2.30 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 2.92 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 2.61 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 5.02 | MC |
| SRR5126147 | root | "mock,1_day" | 3.51 | MC |
| SRR5126148 | root | "mock,1_day" | 2.62 | MC |
| SRR5126149 | root | "mock,1_day" | 1.34 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 2.88 | MC |
| SRR5126153 | root | "mock,7_days" | 2.17 | MC |
| SRR5126155 | root | "mock,7_days" | 1.74 | MC |
| SRR5126157 | root | "mock,7_days" | 0.88 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 3.85 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 3.53 | MC |
| SRR5126165 | root | "mock,14_days" | 2.02 | MC |
| SRR5126167 | root | "mock,14_days" | 3.05 | MC |
| SRR5126169 | root | "mock,14_days" | 4.54 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 2.21 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 3.33 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 1.77 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.51 | MC |
| SRR1213694 | root | wt | 0.61 | MC |
| SRR1213695 | root | wt | 0.30 | MC |
| SRR6502091 | root | 100 mM NaCl | 2.88 | MC |
| SRR6502092 | root | 100 mM NaCl | 2.19 | MC |
| SRR6502093 | root | 100 mM NaCl | 1.34 | MC |
| SRR6502094 | root | control | 5.04 | MC |
| SRR6502095 | root | control | 2.76 | MC |
| SRR6502096 | root | control | 3.26 | MC |
| SRR6502103 | root | 100 mM NaCl | 0.47 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.33 | MC |
| SRR6502106 | root | control | 0.71 | MC |
| SRR6502107 | root | control | 0.65 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.80 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.76 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.27 | MC |
| SRR6441555 | seedling | wild_type | 1.75 | MC |
| SRR2154086 | seedling | wt | 0.75 | MC |
| SRR2154085 | seedling | wt | 1.53 | MC |
| SRR2154087 | seedling | wt | 1.31 | MC |
| SRR3098741 | seedling | wt | 0.38 | MC |
| SRR3098742 | seedling | wt | 0.35 | MC |
| SRR3098743 | seedling | wt | 0.52 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.73 | MC |
| SRR2857720 | seedling | drought_stress_1h | 2.07 | MC |
| SRR358792 | seedling | wt | 1.49 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 1.27 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 2.65 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 6.74 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 11.44 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.63 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 1.80 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.44 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 1.06 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 2.09 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 1.50 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.40 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.35 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.57 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.34 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.55 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.09 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.37 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.33 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.46 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.25 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.53 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.18 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.92 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.17 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.50 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 1.83 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 0.58 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 0.97 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 0.81 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 0.96 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 1.97 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 3.52 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 2.61 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 3.78 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 4.50 | MC |