| SRR4457258 | 2nd_leaf | DAH28 | 0.48 | MC |
| SRR358797 | callus | wt | 1.22 | MC |
| SRR358798 | callus | wt | 0.87 | MC |
| SRR6320473 | carpel | wt | 2.04 | MC |
| SRR6320498 | carpel | wt | 2.43 | MC |
| SRR5560728 | caryopsis | wild_type | 0.36 | MC |
| SRR5560729 | caryopsis | wild_type | 0.29 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.76 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 0.59 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.46 | MC |
| SRR7265402 | coleoptile | 2dA | 0.40 | MC |
| SRR7265403 | coleoptile | 2dN | 0.51 | MC |
| SRR7265404 | coleoptile | 2dN | 0.35 | MC |
| SRR7265411 | coleoptile | 3dN | 0.39 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.87 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 2.11 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 2.69 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 3.37 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 2.20 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 2.52 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.57 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 3.52 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 3.11 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 0.95 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 2.19 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.39 | MC |
| SRR7265376 | embryo | 1hA | 0.39 | MC |
| SRR7265378 | embryo | 1hA | 0.27 | MC |
| SRR7265381 | embryo | 1hN | 0.33 | MC |
| SRR7265384 | embryo | 3hA | 0.43 | MC |
| SRR7265385 | embryo | 3hN | 0.52 | MC |
| SRR7265388 | embryo | 12hA | 0.50 | MC |
| SRR7265390 | embryo | 12hA | 0.38 | MC |
| SRR7265392 | embryo | 12hN | 0.42 | MC |
| SRR7265393 | embryo | 12hN | 0.40 | MC |
| SRR7265398 | embryo | 24hN | 0.72 | MC |
| SRR7265399 | embryo | 24hN | 0.52 | MC |
| SRR4457235 | flag_leaf | DAH12 | 0.43 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.47 | MC |
| SRR4457238 | flag_leaf | DAH20 | 0.37 | MC |
| SRR4457244 | flag_leaf | DAH36 | 0.57 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.53 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.41 | MC |
| SRR1213691 | flower | wt | 0.48 | MC |
| SRR8060835 | leaf | wild_type | 0.72 | MC |
| SRR8060837 | leaf | wild_type | 0.71 | MC |
| SRR8240825 | leaf | wild_type | 0.31 | MC |
| SRR8240826 | leaf | wild_type | 0.34 | MC |
| SRR8240818 | leaf | wild_type | 0.57 | MC |
| SRR8240819 | leaf | wild_type | 0.54 | MC |
| SRR8240820 | leaf | wild_type | 0.52 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.34 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 0.47 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.87 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.76 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.82 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.61 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.62 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.73 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.33 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 2.91 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 1.16 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 1.65 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.97 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.56 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.16 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.89 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.40 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.40 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.91 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.56 | MC |
| SRR504365 | leaf | wt | 0.36 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.40 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.56 | MC |
| SRR6417969 | leaf | H2O_control | 0.42 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.40 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 0.34 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 0.40 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 0.60 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 0.58 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.48 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.31 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.76 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 0.50 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.48 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.61 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.23 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.28 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.28 | MC |
| SRR1213693 | leaf | wt | 0.37 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 1.32 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 1.11 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 1.03 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 0.63 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 0.88 | MC |
| SRR6502100 | leaf | control | 0.43 | MC |
| SRR6502101 | leaf | control | 0.45 | MC |
| SRR5856930 | leaf | salt | 1.79 | MC |
| SRR5856931 | leaf | salt | 1.83 | MC |
| SRR5856932 | leaf | salt | 1.61 | MC |
| SRR5856936 | leaf | salt | 1.52 | MC |
| SRR5856937 | leaf | salt | 1.20 | MC |
| SRR5856938 | leaf | salt | 1.80 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 1.00 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 1.87 | MC |
| SRR6168973 | leaf | none (control) | 0.65 | MC |
| SRR6168974 | leaf | none (control) | 0.40 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 0.69 | MC |
| SRR6168979 | leaf | none (control) | 1.11 | MC |
| SRR6168980 | leaf | none (control) | 0.25 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.25 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.31 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 0.34 | MC |
| SRR5110437 | panicle | Dawn + 7h | 0.74 | MC |
| SRR5110438 | panicle | Dawn + 7h | 0.78 | MC |
| SRR5110457 | panicle | Dawn + 21h | 0.43 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.56 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.72 | MC |
| SRR1633185 | panicle | WT | 0.43 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.36 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 0.96 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 1.04 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.48 | MC |
| SRR5126155 | root | "mock,7_days" | 0.30 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.59 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.73 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.49 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.52 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.29 | MC |
| SRR1213695 | root | wt | 0.38 | MC |
| SRR4947478 | root | control | 3.34 | MC |
| SRR4947479 | root | control | 3.80 | MC |
| SRR4947481 | root | control | 2.96 | MC |
| SRR4947485 | root | Al | 2.41 | MC |
| SRR4947487 | root | control | 4.23 | MC |
| SRR4947489 | root | control | 2.20 | MC |
| SRR4947490 | root | Al | 2.70 | MC |
| SRR4947493 | root | Al | 2.61 | MC |
| SRR4947494 | root | control | 3.61 | MC |
| SRR4947497 | root | control | 3.55 | MC |
| SRR4947501 | root | Al | 3.35 | MC |
| SRR4947503 | root | control | 4.77 | MC |
| SRR4947505 | root | control | 3.44 | MC |
| SRR4947507 | root | Al | 5.73 | MC |
| SRR4947509 | root | Al | 1.97 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.34 | MC |
| SRR6502103 | root | 100 mM NaCl | 0.45 | MC |
| SRR6502104 | root | 100 mM NaCl | 0.37 | MC |
| SRR6441554 | seedling | wild_type | 0.33 | MC |
| SRR6441555 | seedling | wild_type | 0.23 | MC |
| SRR2154084 | seedling | wt | 0.39 | MC |
| SRR3098741 | seedling | wt | 0.17 | MC |
| SRR3098742 | seedling | wt | 0.21 | MC |
| SRR3098743 | seedling | wt | 0.29 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 2.41 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 3.18 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 5.65 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 7.18 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.64 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.87 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.95 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 2.82 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 1.15 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.57 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.76 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 0.46 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 0.49 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 0.32 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 0.41 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 0.36 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 0.65 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.36 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.33 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.36 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.35 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 1.99 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 1.68 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 2.18 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 2.58 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 1.86 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 2.24 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 1.50 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 1.89 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 1.07 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 1.34 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 1.66 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 1.81 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 1.49 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 1.97 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 1.60 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 1.42 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 1.31 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 1.33 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 1.45 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 1.56 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 1.42 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 1.41 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 1.12 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 1.14 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 1.05 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 1.82 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 2.20 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 2.13 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 1.13 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.89 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 0.94 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 0.87 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 1.65 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 2.69 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 1.00 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 1.28 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 0.84 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 0.86 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 1.09 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 1.03 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 1.18 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 1.68 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 1.32 | MC |