| SRR358795 | callus | wt | 2.76 | MC |
| SRR358796 | callus | wt | 1.40 | MC |
| SRR358797 | callus | wt | 4.84 | MC |
| SRR358798 | callus | wt | 3.28 | MC |
| SRR5560729 | caryopsis | wild_type | 0.32 | MC |
| SRR7265376 | embryo | 1hA | 0.71 | MC |
| SRR7265378 | embryo | 1hA | 0.40 | MC |
| SRR7265381 | embryo | 1hN | 0.23 | MC |
| SRR7265382 | embryo | 3hA | 1.03 | MC |
| SRR7265383 | embryo | 3hA | 1.83 | MC |
| SRR7265384 | embryo | 3hA | 1.56 | MC |
| SRR7265385 | embryo | 3hN | 0.58 | MC |
| SRR7265386 | embryo | 3hN | 0.29 | MC |
| SRR7265387 | embryo | 3hN | 0.39 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 6.28 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.14 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.19 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.67 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.39 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 2.05 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 2.21 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.17 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 3.73 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.72 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.56 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 2.01 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 3.47 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.48 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.20 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.42 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.66 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.82 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.03 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 3.62 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.59 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.96 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.59 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 0.76 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.83 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 1.10 | MC |
| SRR1213692 | leaf | wt | 1.04 | MC |
| SRR5856937 | leaf | salt | 0.14 | MC |
| SRR6168973 | leaf | none (control) | 0.70 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 3.77 | MC |
| SRR6168981 | leaf | none (control) | 0.34 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.19 | MC |
| SRR5126167 | root | "mock,14_days" | 0.27 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.79 | MC |
| SRR6502094 | root | control | 1.62 | MC |
| SRR6502096 | root | control | 1.10 | MC |
| SRR6502107 | root | control | 0.88 | MC |
| SRR6502108 | root | control | 0.41 | MC |
| SRR2154083 | seedling | wt | 0.71 | MC |
| SRR3098742 | seedling | wt | 0.22 | MC |
| SRR2857720 | seedling | drought_stress_1h | 2.03 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.55 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 1.59 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 3.75 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 9.09 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 6.46 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 6.19 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.38 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.32 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.34 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 1.85 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 3.29 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 1.93 | MC |