| SRR4457255 | 2nd_leaf | DAH20 | 0.60 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.71 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 1.00 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 0.55 | MC |
| SRR6320473 | carpel | wt | 4.79 | MC |
| SRR5560727 | caryopsis | wild_type | 1.17 | MC |
| SRR5560728 | caryopsis | wild_type | 0.85 | MC |
| SRR5560729 | caryopsis | wild_type | 0.33 | MC |
| SRR4947495 | root | control | 1.76 | MC |
| SRR7265400 | coleoptile | 2dA | 2.02 | MC |
| SRR7265401 | coleoptile | 2dA | 1.08 | MC |
| SRR7265402 | coleoptile | 2dA | 2.29 | MC |
| SRR7265403 | coleoptile | 2dN | 4.37 | MC |
| SRR7265404 | coleoptile | 2dN | 2.80 | MC |
| SRR7265405 | coleoptile | 2dN | 3.10 | MC |
| SRR7265406 | coleoptile | 3dA | 1.60 | MC |
| SRR7265407 | coleoptile | 3dA | 1.63 | MC |
| SRR7265408 | coleoptile | 3dA | 2.11 | MC |
| SRR7265409 | coleoptile | 3dN | 2.66 | MC |
| SRR7265410 | coleoptile | 3dN | 3.28 | MC |
| SRR7265411 | coleoptile | 3dN | 2.51 | MC |
| SRR7265413 | coleoptile | 4dA | 3.49 | MC |
| SRR7265414 | coleoptile | 4dA | 3.26 | MC |
| SRR7265415 | coleoptile | 4dN | 2.26 | MC |
| SRR7265416 | coleoptile | 4dN | 3.14 | MC |
| SRR7265417 | coleoptile | 4dN | 3.13 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 1.67 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 2.58 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 2.17 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.46 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 0.35 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.50 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.42 | MC |
| SRR7265373 | embryo | dry seed 0 h | 2.11 | MC |
| SRR7265374 | embryo | dry seed 0 h | 2.46 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.59 | MC |
| SRR7265376 | embryo | 1hA | 2.00 | MC |
| SRR7265377 | embryo | 1hA | 2.36 | MC |
| SRR7265378 | embryo | 1hA | 2.30 | MC |
| SRR7265379 | embryo | 1hN | 1.92 | MC |
| SRR7265380 | embryo | 1hN | 1.99 | MC |
| SRR7265381 | embryo | 1hN | 2.75 | MC |
| SRR7265383 | embryo | 3hA | 4.05 | MC |
| SRR7265385 | embryo | 3hN | 1.73 | MC |
| SRR7265386 | embryo | 3hN | 1.96 | MC |
| SRR7265387 | embryo | 3hN | 2.36 | MC |
| SRR7265388 | embryo | 12hA | 1.33 | MC |
| SRR7265389 | embryo | 12hA | 2.65 | MC |
| SRR7265390 | embryo | 12hA | 2.92 | MC |
| SRR7265391 | embryo | 12hN | 2.66 | MC |
| SRR7265392 | embryo | 12hN | 2.68 | MC |
| SRR7265394 | embryo | 24hA | 1.85 | MC |
| SRR7265395 | embryo | 24hA | 2.22 | MC |
| SRR7265396 | embryo | 24hA | 3.32 | MC |
| SRR7265397 | embryo | 24hN | 1.58 | MC |
| SRR7265398 | embryo | 24hN | 2.73 | MC |
| SRR7265399 | embryo | 24hN | 3.77 | MC |
| SRR2338868 | endosprem | high_temperature | 0.69 | MC |
| SRR2338869 | endosprem | high_temperature | 1.16 | MC |
| SRR4457247 | flag_leaf | DAH44 | 1.67 | MC |
| SRR4457248 | flag_leaf | DAH44 | 1.69 | MC |
| SRR8240819 | leaf | wild_type | 0.26 | MC |
| SRR8240820 | leaf | wild_type | 0.34 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 2.97 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.75 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 6.53 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 4.55 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 3.46 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 6.48 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 4.81 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 3.19 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 4.06 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 4.05 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 2.24 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 4.05 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 2.24 | MC |
| SRR1761528 | leaf | drought | 4.05 | MC |
| SRR1761529 | leaf | drought | 2.24 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.70 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.18 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 4.00 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 3.75 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.30 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.69 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.40 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.28 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.51 | MC |
| SRR1213692 | leaf | wt | 0.60 | MC |
| SRR1213693 | leaf | wt | 0.34 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 2.05 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 1.53 | MC |
| SRR6502102 | leaf | control | 0.72 | MC |
| SRR5856927 | leaf | control | 1.77 | MC |
| SRR5856928 | leaf | control | 0.99 | MC |
| SRR5856929 | leaf | control | 1.17 | MC |
| SRR5856931 | leaf | salt | 1.63 | MC |
| SRR5856932 | leaf | salt | 1.72 | MC |
| SRR5856933 | leaf | control | 0.79 | MC |
| SRR5856934 | leaf | control | 0.92 | MC |
| SRR5856935 | leaf | control | 1.17 | MC |
| SRR5856937 | leaf | salt | 1.38 | MC |
| SRR5856938 | leaf | salt | 1.61 | MC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 4.84 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 1.15 | MC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 4.52 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 0.99 | MC |
| SRR6168974 | leaf | none (control) | 1.25 | MC |
| SRR6168975 | leaf | none (control) | 0.97 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 4.48 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 0.27 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 1.14 | MC |
| SRR6168979 | leaf | none (control) | 0.76 | MC |
| SRR8582888 | panicle | AM | 0.44 | MC |
| SRR8582891 | panicle | PM | 1.25 | MC |
| SRR8582892 | panicle | PM | 0.81 | MC |
| SRR8582893 | panicle | PM | 0.86 | MC |
| SRR4947496 | root | control | 0.85 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 1.44 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 1.54 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 0.63 | MC |
| SRR5126147 | root | "mock,1_day" | 0.77 | MC |
| SRR5126148 | root | "mock,1_day" | 0.71 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.56 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.56 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.77 | MC |
| SRR5126155 | root | "mock,7_days" | 1.20 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 2.73 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 2.02 | MC |
| SRR5126165 | root | "mock,14_days" | 1.82 | MC |
| SRR5126167 | root | "mock,14_days" | 1.53 | MC |
| SRR5126169 | root | "mock,14_days" | 2.93 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 2.09 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 2.58 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 4.54 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.67 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.55 | MC |
| SRR1213694 | root | wt | 1.08 | MC |
| SRR1213695 | root | wt | 0.43 | MC |
| SRR4947478 | root | control | 2.63 | MC |
| SRR4947480 | root | control | 1.51 | MC |
| SRR4947481 | root | control | 3.41 | MC |
| SRR4947484 | root | Al | 1.63 | MC |
| SRR4947485 | root | Al | 0.99 | MC |
| SRR4947487 | root | control | 1.04 | MC |
| SRR4947488 | root | control | 2.88 | MC |
| SRR4947489 | root | control | 2.98 | MC |
| SRR4947491 | root | Al | 0.75 | MC |
| SRR4947492 | root | Al | 1.26 | MC |
| SRR4947497 | root | control | 0.94 | MC |
| SRR4947498 | root | Al | 1.71 | MC |
| SRR4947499 | root | Al | 1.62 | MC |
| SRR4947500 | root | Al | 1.74 | MC |
| SRR4947501 | root | Al | 1.82 | MC |
| SRR4947502 | root | control | 2.51 | MC |
| SRR4947503 | root | control | 1.62 | MC |
| SRR4947504 | root | control | 2.33 | MC |
| SRR4947505 | root | control | 2.38 | MC |
| SRR4947506 | root | Al | 1.21 | MC |
| SRR4947507 | root | Al | 0.66 | MC |
| SRR4947508 | root | Al | 2.39 | MC |
| SRR4947509 | root | Al | 2.06 | MC |
| SRR6502091 | root | 100 mM NaCl | 1.24 | MC |
| SRR6502092 | root | 100 mM NaCl | 1.42 | MC |
| SRR6502093 | root | 100 mM NaCl | 2.27 | MC |
| SRR6502094 | root | control | 1.26 | MC |
| SRR6502104 | root | 100 mM NaCl | 0.99 | MC |
| SRR6502105 | root | 100 mM NaCl | 2.66 | MC |
| SRR6502106 | root | control | 1.41 | MC |
| SRR6502108 | root | control | 1.80 | MC |
| SRR6441554 | seedling | wild_type | 0.54 | MC |
| SRR6441555 | seedling | wild_type | 0.51 | MC |
| SRR2154086 | seedling | wt | 1.50 | MC |
| SRR2154082 | seedling | wt | 0.52 | MC |
| SRR2154083 | seedling | wt | 0.48 | MC |
| SRR2154085 | seedling | wt | 0.64 | MC |
| SRR2154087 | seedling | wt | 1.44 | MC |
| SRR2857719 | seedling | drought_stress_0h | 1.38 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.18 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 7.62 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 8.48 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.77 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 1.55 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.72 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.32 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.58 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.51 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.55 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.68 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.63 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.08 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.40 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.96 | MC |