| SRR4457250 | 2nd_leaf | DAH4 | 1.75 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 2.07 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 3.11 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 3.31 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 0.60 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 0.82 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 0.92 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.48 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.69 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 1.34 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 1.63 | MC |
| SRR358795 | callus | wt | 6.92 | MC |
| SRR358796 | callus | wt | 6.90 | MC |
| SRR6320473 | carpel | wt | 1.32 | MC |
| SRR6320498 | carpel | wt | 3.05 | MC |
| SRR5560727 | caryopsis | wild_type | 1.13 | MC |
| SRR5560728 | caryopsis | wild_type | 1.53 | MC |
| SRR5560729 | caryopsis | wild_type | 0.49 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.43 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 0.82 | MC |
| SRR7265392 | embryo | 12hN | 0.49 | MC |
| SRR7265393 | embryo | 12hN | 0.77 | MC |
| SRR2338867 | endosprem | control | 1.77 | MC |
| SRR2338868 | endosprem | high_temperature | 2.34 | MC |
| SRR2338869 | endosprem | high_temperature | 1.22 | MC |
| SRR4457231 | flag_leaf | DAH4 | 1.69 | MC |
| SRR4457232 | flag_leaf | DAH4 | 1.45 | MC |
| SRR4457233 | flag_leaf | DAH4 | 2.59 | MC |
| SRR4457234 | flag_leaf | DAH12 | 1.97 | MC |
| SRR4457235 | flag_leaf | DAH12 | 2.59 | MC |
| SRR4457236 | flag_leaf | DAH12 | 3.21 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.76 | MC |
| SRR4457239 | flag_leaf | DAH20 | 0.84 | MC |
| SRR4457241 | flag_leaf | DAH28 | 0.37 | MC |
| SRR4457243 | flag_leaf | DAH36 | 1.11 | MC |
| SRR4457244 | flag_leaf | DAH36 | 1.15 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.85 | MC |
| SRR8240824 | leaf | wild_type | 1.66 | MC |
| SRR8240825 | leaf | wild_type | 1.02 | MC |
| SRR8240818 | leaf | wild_type | 0.38 | MC |
| SRR8240819 | leaf | wild_type | 0.44 | MC |
| SRR8240820 | leaf | wild_type | 0.75 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 2.44 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.23 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.93 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.50 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.16 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.36 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 2.31 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.89 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.88 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.24 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.77 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 2.30 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 2.36 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 2.53 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.12 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.28 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 3.10 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.01 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.02 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.24 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.34 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.37 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.70 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.30 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 2.72 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.51 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.80 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 1.62 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 1.13 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 4.33 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 4.67 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 4.45 | MC |
| SRR1761531 | leaf | control | 4.39 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.15 | MC |
| SRR6417967 | leaf | H2O_control | 0.91 | MC |
| SRR6417968 | leaf | H2O_control | 2.55 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.68 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.25 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.22 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.77 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.90 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.86 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 0.79 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 0.53 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 1.22 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 0.83 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 0.57 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 0.51 | MC |
| SRR6502101 | leaf | control | 0.37 | MC |
| SRR6168979 | leaf | none (control) | 0.52 | MC |
| SRR1633185 | panicle | WT | 0.47 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 0.56 | MC |
| SRR1213695 | root | wt | 0.33 | MC |
| SRR6441554 | seedling | wild_type | 0.30 | MC |
| SRR3098741 | seedling | wt | 0.36 | MC |
| SRR3098742 | seedling | wt | 0.49 | MC |
| SRR3098743 | seedling | wt | 0.23 | MC |
| SRR2857720 | seedling | drought_stress_1h | 0.37 | MC |
| SRR2857721 | seedling | drought_stress_6h | 1.11 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 5.67 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.65 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 5.40 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 1.85 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.15 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.76 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 1.03 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.17 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 2.32 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 1.57 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 1.42 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 2.42 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 1.63 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.98 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 2.17 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.67 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.13 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.94 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.65 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.72 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.24 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 2.26 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.85 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.81 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.32 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.86 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.76 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.83 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 1.04 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 0.51 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 0.58 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 2.07 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.62 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.93 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.71 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.58 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 1.06 | MC |