| SRR4457249 | 2nd_leaf | DAH4 | 4.33 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 4.35 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 0.74 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 3.10 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 3.58 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 1.01 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 1.63 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 0.59 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 1.44 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 1.44 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 1.82 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.39 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 1.27 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 3.28 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 1.23 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 0.95 | MC |
| SRR358795 | callus | wt | 7.24 | MC |
| SRR358797 | callus | wt | 7.57 | MC |
| SRR5560727 | caryopsis | wild_type | 0.98 | MC |
| SRR5560729 | caryopsis | wild_type | 2.40 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 1.75 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 0.47 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.63 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.59 | MC |
| SRR7265400 | coleoptile | 2dA | 3.15 | MC |
| SRR7265401 | coleoptile | 2dA | 2.69 | MC |
| SRR7265402 | coleoptile | 2dA | 2.37 | MC |
| SRR7265403 | coleoptile | 2dN | 2.93 | MC |
| SRR7265404 | coleoptile | 2dN | 3.40 | MC |
| SRR7265405 | coleoptile | 2dN | 3.52 | MC |
| SRR7265406 | coleoptile | 3dA | 2.99 | MC |
| SRR7265407 | coleoptile | 3dA | 2.73 | MC |
| SRR7265408 | coleoptile | 3dA | 2.30 | MC |
| SRR7265409 | coleoptile | 3dN | 3.41 | MC |
| SRR7265410 | coleoptile | 3dN | 3.10 | MC |
| SRR7265411 | coleoptile | 3dN | 2.97 | MC |
| SRR7265412 | coleoptile | 4dA | 2.19 | MC |
| SRR7265413 | coleoptile | 4dA | 4.39 | MC |
| SRR7265414 | coleoptile | 4dA | 3.58 | MC |
| SRR7265415 | coleoptile | 4dN | 3.12 | MC |
| SRR7265416 | coleoptile | 4dN | 3.57 | MC |
| SRR7265417 | coleoptile | 4dN | 3.20 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 3.75 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 3.41 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 3.37 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.57 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 3.36 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 2.45 | MC |
| SRR7265373 | embryo | dry seed 0 h | 2.73 | MC |
| SRR7265374 | embryo | dry seed 0 h | 4.10 | MC |
| SRR7265375 | embryo | dry seed 0 h | 1.02 | MC |
| SRR7265376 | embryo | 1hA | 2.40 | MC |
| SRR7265377 | embryo | 1hA | 2.85 | MC |
| SRR7265378 | embryo | 1hA | 2.85 | MC |
| SRR7265379 | embryo | 1hN | 3.02 | MC |
| SRR7265380 | embryo | 1hN | 3.38 | MC |
| SRR7265381 | embryo | 1hN | 2.86 | MC |
| SRR7265382 | embryo | 3hA | 3.62 | MC |
| SRR7265383 | embryo | 3hA | 2.71 | MC |
| SRR7265384 | embryo | 3hA | 3.49 | MC |
| SRR7265385 | embryo | 3hN | 2.73 | MC |
| SRR7265386 | embryo | 3hN | 2.39 | MC |
| SRR7265387 | embryo | 3hN | 2.32 | MC |
| SRR7265388 | embryo | 12hA | 2.89 | MC |
| SRR7265389 | embryo | 12hA | 3.31 | MC |
| SRR7265390 | embryo | 12hA | 3.04 | MC |
| SRR7265391 | embryo | 12hN | 3.16 | MC |
| SRR7265392 | embryo | 12hN | 4.61 | MC |
| SRR7265393 | embryo | 12hN | 4.06 | MC |
| SRR7265394 | embryo | 24hA | 3.74 | MC |
| SRR7265395 | embryo | 24hA | 3.15 | MC |
| SRR7265396 | embryo | 24hA | 2.46 | MC |
| SRR7265397 | embryo | 24hN | 2.76 | MC |
| SRR7265398 | embryo | 24hN | 3.20 | MC |
| SRR7265399 | embryo | 24hN | 2.81 | MC |
| SRR2338867 | endosprem | control | 0.77 | MC |
| SRR2338869 | endosprem | high_temperature | 0.68 | MC |
| SRR976168 | flag_leaf | wild_type | 0.85 | MC |
| SRR4457231 | flag_leaf | DAH4 | 2.23 | MC |
| SRR4457233 | flag_leaf | DAH4 | 1.73 | MC |
| SRR4457234 | flag_leaf | DAH12 | 1.80 | MC |
| SRR4457235 | flag_leaf | DAH12 | 1.37 | MC |
| SRR4457236 | flag_leaf | DAH12 | 2.26 | MC |
| SRR4457237 | flag_leaf | DAH20 | 1.71 | MC |
| SRR4457238 | flag_leaf | DAH20 | 1.91 | MC |
| SRR4457239 | flag_leaf | DAH20 | 1.92 | MC |
| SRR4457240 | flag_leaf | DAH28 | 1.28 | MC |
| SRR4457241 | flag_leaf | DAH28 | 0.62 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.80 | MC |
| SRR4457243 | flag_leaf | DAH36 | 2.57 | MC |
| SRR4457244 | flag_leaf | DAH36 | 1.02 | MC |
| SRR4457245 | flag_leaf | DAH36 | 3.11 | MC |
| SRR4457246 | flag_leaf | DAH44 | 1.52 | MC |
| SRR4457247 | flag_leaf | DAH44 | 0.79 | MC |
| SRR4457248 | flag_leaf | DAH44 | 1.66 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 1.27 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 1.80 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 4.61 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 4.52 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 5.18 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 4.48 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 4.45 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 5.19 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 6.26 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 4.57 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 4.43 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 4.47 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 4.49 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 4.39 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 4.46 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 4.41 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 5.94 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 5.38 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 4.80 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 6.35 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 4.49 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 4.49 | MC |
| SRR1761528 | leaf | drought | 4.49 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.97 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.72 | MC |
| SRR6417967 | leaf | H2O_control | 1.16 | MC |
| SRR6417968 | leaf | H2O_control | 1.30 | MC |
| SRR6417969 | leaf | H2O_control | 1.06 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.42 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.56 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.63 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.76 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.34 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 1.37 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 2.30 | MC |
| SRR1213693 | leaf | wt | 3.43 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 1.78 | MC |
| SRR6168981 | leaf | none (control) | 0.24 | MC |
| SRR8582888 | panicle | AM | 2.77 | MC |
| SRR8582889 | panicle | AM | 1.13 | MC |
| SRR8582890 | panicle | AM | 2.04 | MC |
| SRR8582891 | panicle | PM | 4.52 | MC |
| SRR8582892 | panicle | PM | 6.50 | MC |
| SRR8582893 | panicle | PM | 4.43 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.48 | MC |
| SRR1633182 | panicle | WT | 1.64 | MC |
| SRR1633185 | panicle | WT | 2.21 | MC |
| SRR5126147 | root | "mock,1_day" | 0.31 | MC |
| SRR5126148 | root | "mock,1_day" | 0.36 | MC |
| SRR5126149 | root | "mock,1_day" | 0.54 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.66 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.56 | MC |
| SRR5126153 | root | "mock,7_days" | 1.39 | MC |
| SRR5126155 | root | "mock,7_days" | 0.37 | MC |
| SRR5126157 | root | "mock,7_days" | 3.06 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 1.49 | MC |
| SRR5126165 | root | "mock,14_days" | 1.29 | MC |
| SRR5126167 | root | "mock,14_days" | 0.52 | MC |
| SRR5126169 | root | "mock,14_days" | 0.62 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 1.16 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.78 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.88 | MC |
| SRR1213694 | root | wt | 1.90 | MC |
| SRR4947478 | root | control | 4.58 | MC |
| SRR4947479 | root | control | 3.93 | MC |
| SRR4947482 | root | Al | 2.85 | MC |
| SRR4947483 | root | Al | 3.05 | MC |
| SRR4947487 | root | control | 3.01 | MC |
| SRR4947490 | root | Al | 3.27 | MC |
| SRR4947491 | root | Al | 5.46 | MC |
| SRR4947494 | root | control | 4.45 | MC |
| SRR4947498 | root | Al | 5.26 | MC |
| SRR4947506 | root | Al | 4.06 | MC |
| SRR1740434 | root_differentiation_zone | wt | 1.16 | MC |
| SRR1740431 | root_elongation_zone | wt | 2.11 | MC |
| SRR1740428 | root_meristematic_zone | wt | 2.27 | MC |
| SRR1740429 | root_meristematic_zone | wt | 1.90 | MC |
| SRR1740430 | root_meristematic_zone | wt | 1.98 | MC |
| SRR6441554 | seedling | wild_type | 0.67 | MC |
| SRR6441555 | seedling | wild_type | 0.36 | MC |
| SRR2154086 | seedling | wt | 0.84 | MC |
| SRR2154087 | seedling | wt | 1.94 | MC |
| SRR3098741 | seedling | wt | 0.43 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 0.45 | MC |
| SRR358791 | seedling | wt | 6.37 | MC |
| SRR358792 | seedling | wt | 5.73 | MC |
| SRR358793 | seedling | wt | 2.48 | MC |
| SRR358794 | seedling | wt | 2.39 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 3.48 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.99 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 4.85 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 6.93 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 11.22 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.91 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 5.68 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.70 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.79 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 1.55 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 1.99 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 1.77 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 2.49 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 1.98 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 1.66 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 2.73 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 3.24 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 2.71 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 2.78 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 2.41 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 4.08 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 2.64 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 2.72 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 3.22 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 3.04 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 3.02 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 2.44 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 3.62 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 3.31 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 2.10 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 2.03 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.49 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.82 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.07 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.10 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.57 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.90 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 7.81 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 6.59 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 8.14 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 7.08 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 7.24 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 5.49 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 5.92 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 4.98 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 1.47 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.46 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.46 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 1.74 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 2.10 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 3.45 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 2.78 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 2.98 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 2.79 | MC |