| SRR5560727 | caryopsis | wild_type | 0.26 | MC |
| SRR5560728 | caryopsis | wild_type | 0.81 | MC |
| SRR5560729 | caryopsis | wild_type | 0.33 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.45 | MC |
| SRR4947495 | root | control | 1.67 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.54 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 2.23 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 1.53 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 1.61 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 2.18 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 1.64 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 1.49 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 1.35 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.66 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 2.24 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 1.66 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 1.67 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 2.96 | MC |
| SRR7265391 | embryo | 12hN | 0.47 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.24 | MC |
| SRR8240825 | leaf | wild_type | 0.25 | MC |
| SRR5856927 | leaf | control | 1.21 | MC |
| SRR5856928 | leaf | control | 0.63 | MC |
| SRR5856929 | leaf | control | 1.31 | MC |
| SRR5856933 | leaf | control | 0.58 | MC |
| SRR5856934 | leaf | control | 0.58 | MC |
| SRR5856935 | leaf | control | 0.62 | MC |
| SRR6168973 | leaf | none (control) | 0.57 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 0.99 | MC |
| SRR6168979 | leaf | none (control) | 0.22 | MC |
| SRR6168980 | leaf | none (control) | 0.32 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.18 | MC |
| SRR1633182 | panicle | WT | 1.50 | MC |
| SRR1633185 | panicle | WT | 0.50 | MC |
| SRR5126147 | root | "mock,1_day" | 0.47 | MC |
| SRR5126148 | root | "mock,1_day" | 0.79 | MC |
| SRR5126149 | root | "mock,1_day" | 1.85 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 1.34 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 2.18 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.70 | MC |
| SRR5126155 | root | "mock,7_days" | 1.59 | MC |
| SRR5126157 | root | "mock,7_days" | 1.69 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 1.38 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.59 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.53 | MC |
| SRR5126165 | root | "mock,14_days" | 2.21 | MC |
| SRR5126167 | root | "mock,14_days" | 1.11 | MC |
| SRR5126169 | root | "mock,14_days" | 2.01 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.88 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 2.21 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.69 | MC |
| SRR1213694 | root | wt | 0.30 | MC |
| SRR4947478 | root | control | 1.27 | MC |
| SRR4947479 | root | control | 1.75 | MC |
| SRR4947482 | root | Al | 1.46 | MC |
| SRR4947483 | root | Al | 0.75 | MC |
| SRR4947484 | root | Al | 0.67 | MC |
| SRR4947487 | root | control | 0.62 | MC |
| SRR4947488 | root | control | 0.97 | MC |
| SRR4947490 | root | Al | 1.74 | MC |
| SRR4947491 | root | Al | 1.78 | MC |
| SRR4947493 | root | Al | 1.24 | MC |
| SRR4947494 | root | control | 0.96 | MC |
| SRR4947497 | root | control | 0.84 | MC |
| SRR4947498 | root | Al | 1.89 | MC |
| SRR4947499 | root | Al | 2.42 | MC |
| SRR4947501 | root | Al | 0.69 | MC |
| SRR4947502 | root | control | 1.39 | MC |
| SRR4947503 | root | control | 1.22 | MC |
| SRR4947504 | root | control | 0.59 | MC |
| SRR4947505 | root | control | 0.82 | MC |
| SRR4947506 | root | Al | 1.60 | MC |
| SRR4947507 | root | Al | 2.04 | MC |
| SRR4947508 | root | Al | 1.23 | MC |
| SRR4947509 | root | Al | 0.61 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.93 | MC |
| SRR6502092 | root | 100 mM NaCl | 1.08 | MC |
| SRR6502104 | root | 100 mM NaCl | 0.64 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.91 | MC |
| SRR6502106 | root | control | 0.54 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.24 | MC |
| SRR2154086 | seedling | wt | 0.47 | MC |
| SRR2154083 | seedling | wt | 0.66 | MC |
| SRR2154084 | seedling | wt | 1.39 | MC |
| SRR2154085 | seedling | wt | 0.37 | MC |
| SRR2154087 | seedling | wt | 0.85 | MC |
| SRR3098741 | seedling | wt | 0.36 | MC |
| SRR3098742 | seedling | wt | 0.25 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.48 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 2.00 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 1.68 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 5.29 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 12.68 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 5.08 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 6.36 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.34 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.78 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 1.90 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 2.54 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 2.14 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 1.70 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 3.16 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 2.82 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 1.91 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 1.39 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 1.60 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 1.61 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 1.42 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 1.23 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 1.00 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 1.56 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 2.04 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 1.91 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 1.13 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 1.83 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 2.31 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 2.40 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 1.91 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 1.65 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 1.32 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.34 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.68 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.91 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.70 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.39 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 0.71 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.44 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 0.41 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.23 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.28 | MC |