| SRR5560728 | caryopsis | wild_type | 0.29 | MC |
| SRR5560729 | caryopsis | wild_type | 0.93 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.41 | MC |
| SRR7265405 | coleoptile | 2dN | 0.37 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.39 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.73 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.30 | MC |
| SRR7265374 | embryo | dry seed 0 h | 0.44 | MC |
| SRR7265376 | embryo | 1hA | 0.41 | MC |
| SRR7265378 | embryo | 1hA | 0.27 | MC |
| SRR7265379 | embryo | 1hN | 0.56 | MC |
| SRR7265381 | embryo | 1hN | 0.28 | MC |
| SRR7265384 | embryo | 3hA | 0.32 | MC |
| SRR7265385 | embryo | 3hN | 0.47 | MC |
| SRR7265386 | embryo | 3hN | 0.30 | MC |
| SRR7265387 | embryo | 3hN | 0.24 | MC |
| SRR7265388 | embryo | 12hA | 0.43 | MC |
| SRR7265389 | embryo | 12hA | 0.57 | MC |
| SRR7265390 | embryo | 12hA | 0.48 | MC |
| SRR2338866 | endosprem | control | 1.43 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.19 | MC |
| SRR1213691 | flower | wt | 0.40 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 1.01 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 0.50 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 0.50 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 0.50 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 0.50 | MC |
| SRR1761530 | leaf | control | 0.50 | MC |
| SRR1761531 | leaf | control | 0.50 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.70 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.68 | MC |
| SRR6502090 | leaf | control | 0.45 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.35 | MC |
| SRR1633182 | panicle | WT | 1.94 | MC |
| SRR1633185 | panicle | WT | 1.77 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.26 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.54 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 1.89 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 1.04 | MC |
| SRR5126148 | root | "mock,1_day" | 0.43 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.37 | MC |
| SRR5126157 | root | "mock,7_days" | 0.42 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.49 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.38 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.34 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.47 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.31 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.68 | MC |
| SRR6502092 | root | 100 mM NaCl | 0.41 | MC |
| SRR6502093 | root | 100 mM NaCl | 0.57 | MC |
| SRR6502095 | root | control | 0.56 | MC |
| SRR6502103 | root | 100 mM NaCl | 0.55 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.56 | MC |
| SRR6502107 | root | control | 0.39 | MC |
| SRR3098741 | seedling | wt | 0.19 | MC |
| SRR3098742 | seedling | wt | 0.25 | MC |
| SRR3098743 | seedling | wt | 0.17 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 1.44 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.87 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 4.24 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 12.02 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 10.04 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 4.56 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 4.97 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.04 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.10 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.68 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.73 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.51 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 2.24 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 1.45 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 1.00 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 2.37 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 1.41 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 1.66 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 1.02 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 0.93 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 0.87 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 0.76 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 1.60 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 1.22 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 1.13 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 1.60 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 0.81 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 1.11 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 1.45 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 1.30 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 0.84 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 1.03 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 2.21 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 1.65 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 1.43 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.85 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 1.42 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 1.21 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 2.21 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 1.35 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.93 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 1.33 | MC |