| SRR358795 | callus | wt | 1.07 | MC |
| SRR358796 | callus | wt | 1.89 | MC |
| SRR358797 | callus | wt | 1.21 | MC |
| SRR358798 | callus | wt | 0.94 | MC |
| SRR5560727 | caryopsis | wild_type | 0.28 | MC |
| SRR5560728 | caryopsis | wild_type | 0.46 | MC |
| SRR5560729 | caryopsis | wild_type | 0.78 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 1.29 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 1.21 | MC |
| SRR4947495 | root | control | 1.27 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.47 | MC |
| SRR7265400 | coleoptile | 2dA | 0.70 | MC |
| SRR7265401 | coleoptile | 2dA | 0.42 | MC |
| SRR7265402 | coleoptile | 2dA | 0.60 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 0.53 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.94 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 1.57 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 1.31 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 0.62 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 0.82 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 0.58 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.89 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 1.04 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 1.44 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 1.04 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 0.67 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 0.41 | MC |
| SRR7265387 | embryo | 3hN | 0.26 | MC |
| SRR2338868 | endosprem | high_temperature | 0.49 | MC |
| SRR976168 | flag_leaf | wild_type | 0.57 | MC |
| SRR4457238 | flag_leaf | DAH20 | 0.42 | MC |
| SRR4457240 | flag_leaf | DAH28 | 0.50 | MC |
| SRR8060835 | leaf | wild_type | 2.10 | MC |
| SRR8060837 | leaf | wild_type | 1.85 | MC |
| SRR8240825 | leaf | wild_type | 1.33 | MC |
| SRR8240826 | leaf | wild_type | 0.53 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.54 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.61 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.21 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.66 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.71 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.78 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.23 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 1.08 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 1.24 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.91 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.54 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.50 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.50 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.51 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.31 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.47 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.98 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.37 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.67 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.63 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 2.06 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 1.58 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 2.48 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 2.06 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 1.58 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 2.48 | MC |
| SRR1761529 | leaf | drought | 2.06 | MC |
| SRR1761530 | leaf | control | 1.58 | MC |
| SRR1761531 | leaf | control | 2.48 | MC |
| SRR504365 | leaf | wt | 0.28 | MC |
| SRR6417968 | leaf | H2O_control | 0.38 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.84 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 0.88 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 1.06 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 0.98 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 1.08 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 1.06 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 0.74 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.61 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.77 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 1.50 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 1.03 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 0.84 | MC |
| SRR8611900 | leaf | Non-inoculated | 3.43 | MC |
| SRR8611901 | leaf | Non-inoculated | 1.54 | MC |
| SRR8611902 | leaf | Non-inoculated | 1.92 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 3.26 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 2.07 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 1.15 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 1.33 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 3.48 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 2.29 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 1.89 | MC |
| SRR6502088 | leaf | control | 1.58 | MC |
| SRR6502089 | leaf | control | 1.38 | MC |
| SRR6502090 | leaf | control | 0.93 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 2.69 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 3.21 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 0.47 | MC |
| SRR6502101 | leaf | control | 1.62 | MC |
| SRR6502102 | leaf | control | 3.54 | MC |
| SRR5856927 | leaf | control | 0.72 | MC |
| SRR5856928 | leaf | control | 0.89 | MC |
| SRR5856930 | leaf | salt | 0.48 | MC |
| SRR5856931 | leaf | salt | 0.35 | MC |
| SRR5856932 | leaf | salt | 0.59 | MC |
| SRR5856933 | leaf | control | 0.44 | MC |
| SRR5856934 | leaf | control | 0.40 | MC |
| SRR5856935 | leaf | control | 0.36 | MC |
| SRR5856936 | leaf | salt | 0.45 | MC |
| SRR5856937 | leaf | salt | 0.58 | MC |
| SRR5856938 | leaf | salt | 0.39 | MC |
| SRR6168975 | leaf | none (control) | 3.46 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 3.07 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 0.32 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 2.48 | MC |
| SRR6168979 | leaf | none (control) | 1.38 | MC |
| SRR6168980 | leaf | none (control) | 1.44 | MC |
| SRR6168981 | leaf | none (control) | 0.67 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.71 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.58 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.45 | MC |
| SRR8582888 | panicle | AM | 0.86 | MC |
| SRR8582889 | panicle | AM | 1.15 | MC |
| SRR8582890 | panicle | AM | 1.04 | MC |
| SRR8582891 | panicle | PM | 0.64 | MC |
| SRR8582893 | panicle | PM | 1.13 | MC |
| SRR4947496 | root | control | 4.18 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 0.74 | MC |
| SRR1633185 | panicle | WT | 0.69 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.43 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.48 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.44 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 0.96 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 0.44 | MC |
| SRR5126147 | root | "mock,1_day" | 3.75 | MC |
| SRR5126149 | root | "mock,1_day" | 3.02 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.41 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.81 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.42 | MC |
| SRR5126153 | root | "mock,7_days" | 2.77 | MC |
| SRR5126155 | root | "mock,7_days" | 4.39 | MC |
| SRR5126157 | root | "mock,7_days" | 2.29 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 1.07 | MC |
| SRR5126165 | root | "mock,14_days" | 1.17 | MC |
| SRR5126167 | root | "mock,14_days" | 0.88 | MC |
| SRR5126169 | root | "mock,14_days" | 2.27 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.49 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 1.19 | MC |
| SRR4947478 | root | control | 1.06 | MC |
| SRR4947479 | root | control | 0.71 | MC |
| SRR4947480 | root | control | 2.60 | MC |
| SRR4947481 | root | control | 2.50 | MC |
| SRR4947482 | root | Al | 0.59 | MC |
| SRR4947483 | root | Al | 1.82 | MC |
| SRR4947484 | root | Al | 1.70 | MC |
| SRR4947485 | root | Al | 2.77 | MC |
| SRR4947487 | root | control | 0.93 | MC |
| SRR4947488 | root | control | 2.81 | MC |
| SRR4947489 | root | control | 2.89 | MC |
| SRR4947491 | root | Al | 1.05 | MC |
| SRR4947492 | root | Al | 1.29 | MC |
| SRR4947493 | root | Al | 2.54 | MC |
| SRR4947494 | root | control | 0.83 | MC |
| SRR4947497 | root | control | 2.67 | MC |
| SRR4947498 | root | Al | 1.15 | MC |
| SRR4947499 | root | Al | 0.53 | MC |
| SRR4947500 | root | Al | 1.76 | MC |
| SRR4947501 | root | Al | 1.17 | MC |
| SRR4947502 | root | control | 0.94 | MC |
| SRR4947503 | root | control | 3.01 | MC |
| SRR4947504 | root | control | 3.15 | MC |
| SRR4947505 | root | control | 3.49 | MC |
| SRR4947506 | root | Al | 0.76 | MC |
| SRR4947507 | root | Al | 1.16 | MC |
| SRR4947508 | root | Al | 2.36 | MC |
| SRR4947509 | root | Al | 1.74 | MC |
| SRR6502091 | root | 100 mM NaCl | 3.61 | MC |
| SRR6502092 | root | 100 mM NaCl | 5.14 | MC |
| SRR6502093 | root | 100 mM NaCl | 4.37 | MC |
| SRR6502094 | root | control | 2.03 | MC |
| SRR6502095 | root | control | 3.09 | MC |
| SRR6502096 | root | control | 4.30 | MC |
| SRR6502103 | root | 100 mM NaCl | 3.14 | MC |
| SRR6502104 | root | 100 mM NaCl | 3.17 | MC |
| SRR6502105 | root | 100 mM NaCl | 3.27 | MC |
| SRR6502108 | root | control | 2.84 | MC |
| SRR1740431 | root_elongation_zone | wt | 1.17 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.25 | MC |
| SRR1740428 | root_meristematic_zone | wt | 1.67 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.41 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.76 | MC |
| SRR6441554 | seedling | wild_type | 2.89 | MC |
| SRR2154086 | seedling | wt | 1.63 | MC |
| SRR2154082 | seedling | wt | 1.69 | MC |
| SRR2154083 | seedling | wt | 1.44 | MC |
| SRR2154084 | seedling | wt | 2.49 | MC |
| SRR2154085 | seedling | wt | 2.56 | MC |
| SRR2154087 | seedling | wt | 3.18 | MC |
| SRR3098741 | seedling | wt | 1.89 | MC |
| SRR3098742 | seedling | wt | 2.49 | MC |
| SRR3098743 | seedling | wt | 2.35 | MC |
| SRR2857719 | seedling | drought_stress_0h | 1.03 | MC |
| SRR2857720 | seedling | drought_stress_1h | 2.52 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.49 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 1.16 | MC |
| SRR358792 | seedling | wt | 2.01 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 5.86 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 12.49 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 9.66 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.48 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 4.27 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.20 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.31 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 1.20 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 1.75 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 1.42 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.81 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.60 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.95 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 0.53 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 1.77 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 0.73 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 0.28 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 1.08 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 1.44 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 1.53 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 1.06 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.43 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.94 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.91 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.96 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 2.73 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 3.20 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 2.13 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 3.30 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 1.34 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 1.85 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.83 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.67 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.80 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.07 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.61 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.00 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 3.27 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 3.20 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 1.56 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 0.66 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 0.50 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 0.77 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 0.74 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 0.57 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 0.75 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 0.57 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 0.66 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 0.78 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 0.72 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 1.08 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 1.26 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 2.27 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 1.84 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.28 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.45 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.88 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.57 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 1.04 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 0.52 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.26 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.30 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.23 | MC |