| SRR3745126 | anther | wt | 1.10 | MC |
| SRR6320498 | carpel | wt | 1.42 | MC |
| SRR5560727 | caryopsis | wild_type | 0.34 | MC |
| SRR5560729 | caryopsis | wild_type | 0.51 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.41 | MC |
| SRR7265400 | coleoptile | 2dA | 0.33 | MC |
| SRR7265401 | coleoptile | 2dA | 0.30 | MC |
| SRR7265406 | coleoptile | 3dA | 0.44 | MC |
| SRR7265407 | coleoptile | 3dA | 0.53 | MC |
| SRR7265408 | coleoptile | 3dA | 0.40 | MC |
| SRR7265415 | coleoptile | 4dN | 0.54 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 0.84 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 0.70 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 0.51 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 0.35 | MC |
| SRR1213691 | flower | wt | 1.81 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 0.44 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 0.43 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.53 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.22 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.25 | MC |
| SRR5856927 | leaf | control | 0.81 | MC |
| SRR5856928 | leaf | control | 0.49 | MC |
| SRR5856929 | leaf | control | 0.47 | MC |
| SRR5856933 | leaf | control | 0.42 | MC |
| SRR5856934 | leaf | control | 0.95 | MC |
| SRR5856935 | leaf | control | 1.69 | MC |
| SRR6168974 | leaf | none (control) | 1.73 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 0.43 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 0.46 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 1.49 | MC |
| SRR6168980 | leaf | none (control) | 0.24 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 1.39 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 1.63 | MC |
| SRR4947496 | root | control | 1.43 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 1.18 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.64 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.83 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.71 | MC |
| SRR5126147 | root | "mock,1_day" | 0.46 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 2.80 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 1.77 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.71 | MC |
| SRR5126157 | root | "mock,7_days" | 1.80 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 1.72 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 1.46 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 1.17 | MC |
| SRR5126165 | root | "mock,14_days" | 0.64 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 1.91 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 2.38 | MC |
| SRR4947478 | root | control | 0.54 | MC |
| SRR4947480 | root | control | 1.89 | MC |
| SRR4947481 | root | control | 0.51 | MC |
| SRR4947482 | root | Al | 0.95 | MC |
| SRR4947484 | root | Al | 0.84 | MC |
| SRR4947485 | root | Al | 1.01 | MC |
| SRR4947488 | root | control | 2.07 | MC |
| SRR4947489 | root | control | 1.20 | MC |
| SRR4947490 | root | Al | 1.10 | MC |
| SRR4947491 | root | Al | 0.60 | MC |
| SRR4947501 | root | Al | 0.49 | MC |
| SRR4947504 | root | control | 1.03 | MC |
| SRR4947505 | root | control | 1.14 | MC |
| SRR4947506 | root | Al | 0.55 | MC |
| SRR4947508 | root | Al | 1.06 | MC |
| SRR4947509 | root | Al | 0.63 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.23 | MC |
| SRR1740428 | root_meristematic_zone | wt | 0.72 | MC |
| SRR2154082 | seedling | wt | 0.29 | MC |
| SRR2154084 | seedling | wt | 0.41 | MC |
| SRR3098742 | seedling | wt | 0.28 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 1.54 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.37 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 8.90 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.85 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.81 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.73 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.47 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.68 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.39 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.45 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 1.29 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.73 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 1.61 | MC |