| SRR6320498 | carpel | wt | 1.94 | MC |
| SRR5560727 | caryopsis | wild_type | 0.93 | MC |
| SRR5560728 | caryopsis | wild_type | 1.60 | MC |
| SRR5560729 | caryopsis | wild_type | 1.10 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.93 | MC |
| SRR7265407 | coleoptile | 3dA | 0.28 | MC |
| SRR7265412 | coleoptile | 4dA | 1.80 | MC |
| SRR7265413 | coleoptile | 4dA | 0.93 | MC |
| SRR7265414 | coleoptile | 4dA | 1.52 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.85 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 0.66 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 1.06 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.34 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.45 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 0.41 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 0.56 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 0.58 | MC |
| SRR4457247 | flag_leaf | DAH44 | 0.84 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.29 | MC |
| SRR8060836 | leaf | wild_type | 0.70 | MC |
| SRR8060837 | leaf | wild_type | 0.22 | MC |
| SRR8240825 | leaf | wild_type | 0.26 | MC |
| SRR8240818 | leaf | wild_type | 0.50 | MC |
| SRR8240820 | leaf | wild_type | 0.56 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 1.61 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 2.41 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 1.57 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 0.58 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.85 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.79 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.13 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.62 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.48 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.27 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 0.53 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.35 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.02 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.54 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.23 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.44 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 0.65 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 0.65 | MC |
| SRR1761531 | leaf | control | 0.65 | MC |
| SRR504365 | leaf | wt | 0.49 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.90 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.55 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.31 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.69 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.57 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.83 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 1.07 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.39 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.66 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 0.63 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 1.24 | MC |
| SRR6502089 | leaf | control | 0.48 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 0.90 | MC |
| SRR5856927 | leaf | control | 0.51 | MC |
| SRR5856928 | leaf | control | 0.94 | MC |
| SRR5856929 | leaf | control | 0.51 | MC |
| SRR5856930 | leaf | salt | 0.28 | MC |
| SRR5856931 | leaf | salt | 0.39 | MC |
| SRR5856933 | leaf | control | 0.39 | MC |
| SRR5856934 | leaf | control | 0.38 | MC |
| SRR5856935 | leaf | control | 0.81 | MC |
| SRR5856937 | leaf | salt | 0.29 | MC |
| SRR5856938 | leaf | salt | 0.42 | MC |
| SRR6168973 | leaf | none (control) | 2.21 | MC |
| SRR6168974 | leaf | none (control) | 3.89 | MC |
| SRR6168975 | leaf | none (control) | 2.23 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 2.46 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 0.82 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 1.98 | MC |
| SRR6168979 | leaf | none (control) | 0.29 | MC |
| SRR6168980 | leaf | none (control) | 0.34 | MC |
| SRR6168981 | leaf | none (control) | 0.34 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 1.12 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 1.64 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.90 | MC |
| SRR8582889 | panicle | AM | 0.57 | MC |
| SRR8582890 | panicle | AM | 0.47 | MC |
| SRR8582891 | panicle | PM | 1.08 | MC |
| SRR8582892 | panicle | PM | 1.14 | MC |
| SRR8582893 | panicle | PM | 1.10 | MC |
| SRR4947496 | root | control | 0.72 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 1.05 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 0.76 | MC |
| SRR5110445 | panicle | Dusk | 0.55 | MC |
| SRR5110447 | panicle | Dusk | 1.22 | MC |
| SRR5110448 | panicle | Dusk | 0.79 | MC |
| SRR5110452 | panicle | Dawn + 14h | 0.86 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 0.59 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 1.03 | MC |
| SRR5110459 | panicle | Dawn + 21h | 0.88 | MC |
| SRR1633182 | panicle | WT | 0.38 | MC |
| SRR1633185 | panicle | WT | 0.99 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 1.58 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.94 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 1.24 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 1.28 | MC |
| SRR5126147 | root | "mock,1_day" | 0.72 | MC |
| SRR5126148 | root | "mock,1_day" | 1.04 | MC |
| SRR5126149 | root | "mock,1_day" | 0.86 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.56 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.64 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.43 | MC |
| SRR5126153 | root | "mock,7_days" | 1.52 | MC |
| SRR5126155 | root | "mock,7_days" | 2.11 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.45 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.57 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 1.17 | MC |
| SRR5126165 | root | "mock,14_days" | 0.36 | MC |
| SRR5126167 | root | "mock,14_days" | 1.24 | MC |
| SRR5126169 | root | "mock,14_days" | 1.31 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.72 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 1.45 | MC |
| SRR1213695 | root | wt | 0.15 | MC |
| SRR4947481 | root | control | 0.69 | MC |
| SRR4947482 | root | Al | 0.33 | MC |
| SRR4947509 | root | Al | 1.16 | MC |
| SRR6502094 | root | control | 1.45 | MC |
| SRR6502107 | root | control | 0.31 | MC |
| SRR1740434 | root_differentiation_zone | wt | 1.00 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.22 | MC |
| SRR1740431 | root_elongation_zone | wt | 0.61 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.61 | MC |
| SRR6441554 | seedling | wild_type | 1.04 | MC |
| SRR6441555 | seedling | wild_type | 0.90 | MC |
| SRR2154083 | seedling | wt | 0.48 | MC |
| SRR3098741 | seedling | wt | 0.73 | MC |
| SRR3098742 | seedling | wt | 0.84 | MC |
| SRR3098743 | seedling | wt | 1.59 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.52 | MC |
| SRR2857720 | seedling | drought_stress_1h | 0.63 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.62 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 2.27 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.08 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 4.10 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 10.23 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.53 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 6.02 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 1.98 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.22 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.30 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.72 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 0.92 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.34 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.55 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.47 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.47 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.53 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.89 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.98 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 1.14 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.69 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.38 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.55 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.44 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 2.02 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.14 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 0.57 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 1.04 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.39 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.30 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.34 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 1.34 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 0.83 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.54 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 0.84 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.28 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.22 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.35 | MC |