| SRR4457252 | 2nd_leaf | DAH12 | 0.35 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 0.37 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 0.48 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 2.72 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.72 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 0.59 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.47 | MC |
| SRR6320473 | carpel | wt | 1.86 | MC |
| SRR6320498 | carpel | wt | 3.86 | MC |
| SRR5560729 | caryopsis | wild_type | 4.78 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.50 | MC |
| SRR7265405 | coleoptile | 2dN | 0.44 | MC |
| SRR7265407 | coleoptile | 3dA | 0.51 | MC |
| SRR7265409 | coleoptile | 3dN | 1.04 | MC |
| SRR7265410 | coleoptile | 3dN | 1.09 | MC |
| SRR7265411 | coleoptile | 3dN | 0.68 | MC |
| SRR7265415 | coleoptile | 4dN | 1.26 | MC |
| SRR7265416 | coleoptile | 4dN | 1.45 | MC |
| SRR7265417 | coleoptile | 4dN | 0.60 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 0.66 | MC |
| SRR7265388 | embryo | 12hA | 0.67 | MC |
| SRR7265391 | embryo | 12hN | 1.80 | MC |
| SRR7265392 | embryo | 12hN | 0.77 | MC |
| SRR7265393 | embryo | 12hN | 1.24 | MC |
| SRR7265397 | embryo | 24hN | 0.81 | MC |
| SRR7265399 | embryo | 24hN | 0.42 | MC |
| SRR2338867 | endosprem | control | 0.80 | MC |
| SRR4457246 | flag_leaf | DAH44 | 1.77 | MC |
| SRR4457247 | flag_leaf | DAH44 | 0.95 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.40 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 2.73 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.18 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.42 | MC |
| SRR504365 | leaf | wt | 0.26 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.29 | MC |
| SRR5856927 | leaf | control | 0.58 | MC |
| SRR5856928 | leaf | control | 0.65 | MC |
| SRR5856929 | leaf | control | 0.73 | MC |
| SRR5856933 | leaf | control | 2.21 | MC |
| SRR5856934 | leaf | control | 0.66 | MC |
| SRR5856935 | leaf | control | 1.05 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 3.07 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 1.90 | MC |
| SRR6168973 | leaf | none (control) | 0.51 | MC |
| SRR6168974 | leaf | none (control) | 0.84 | MC |
| SRR6168975 | leaf | none (control) | 1.08 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 1.43 | MC |
| SRR6168980 | leaf | none (control) | 0.34 | MC |
| SRR6168981 | leaf | none (control) | 0.44 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 1.05 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.46 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.48 | MC |
| SRR5110430 | panicle | Dawn | 0.88 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 1.50 | MC |
| SRR5110445 | panicle | Dusk | 0.48 | MC |
| SRR5110446 | panicle | Dusk | 3.16 | MC |
| SRR5110451 | panicle | Dawn + 14h | 1.91 | MC |
| SRR5110457 | panicle | Dawn + 21h | 2.30 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.16 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 1.83 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.66 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 2.64 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 1.75 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 0.65 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 0.64 | MC |
| SRR5126147 | root | "mock,1_day" | 0.53 | MC |
| SRR5126149 | root | "mock,1_day" | 1.98 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 1.30 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 4.24 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.61 | MC |
| SRR5126153 | root | "mock,7_days" | 0.49 | MC |
| SRR5126155 | root | "mock,7_days" | 1.15 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 3.53 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 4.33 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 1.22 | MC |
| SRR5126165 | root | "mock,14_days" | 1.96 | MC |
| SRR5126167 | root | "mock,14_days" | 1.51 | MC |
| SRR5126169 | root | "mock,14_days" | 2.54 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 2.73 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 2.93 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.63 | MC |
| SRR1213694 | root | wt | 1.87 | MC |
| SRR4947482 | root | Al | 1.93 | MC |
| SRR4947490 | root | Al | 1.64 | MC |
| SRR4947498 | root | Al | 3.14 | MC |
| SRR4947499 | root | Al | 2.50 | MC |
| SRR4947502 | root | control | 0.72 | MC |
| SRR4947507 | root | Al | 5.30 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.83 | MC |
| SRR6502092 | root | 100 mM NaCl | 0.64 | MC |
| SRR6502093 | root | 100 mM NaCl | 4.65 | MC |
| SRR6502095 | root | control | 1.78 | MC |
| SRR6502103 | root | 100 mM NaCl | 4.68 | MC |
| SRR6502104 | root | 100 mM NaCl | 4.36 | MC |
| SRR6502105 | root | 100 mM NaCl | 2.48 | MC |
| SRR6502106 | root | control | 2.83 | MC |
| SRR6502107 | root | control | 0.49 | MC |
| SRR6502108 | root | control | 0.57 | MC |
| SRR2154086 | seedling | wt | 1.93 | MC |
| SRR2154083 | seedling | wt | 1.38 | MC |
| SRR2154087 | seedling | wt | 1.67 | MC |
| SRR2857719 | seedling | drought_stress_0h | 1.88 | MC |
| SRR2857720 | seedling | drought_stress_1h | 0.92 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.62 | MC |
| SRR358792 | seedling | wt | 2.56 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.28 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 2.68 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 5.15 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 13.90 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.03 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.65 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.33 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.69 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 2.67 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.41 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 1.80 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 0.47 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 0.57 | MC |