| SRR4457251 | 2nd_leaf | DAH4 | 0.76 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 1.10 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 1.47 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.77 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.27 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 0.89 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 0.75 | MC |
| SRR5560727 | caryopsis | wild_type | 0.45 | MC |
| SRR5560728 | caryopsis | wild_type | 3.46 | MC |
| SRR7265400 | coleoptile | 2dA | 0.63 | MC |
| SRR7265402 | coleoptile | 2dA | 0.67 | MC |
| SRR7265412 | coleoptile | 4dA | 0.95 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 0.61 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 1.47 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.71 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 0.86 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 0.53 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 0.86 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.70 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.35 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 0.37 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 1.13 | MC |
| SRR7265378 | embryo | 1hA | 0.33 | MC |
| SRR7265379 | embryo | 1hN | 0.60 | MC |
| SRR7265381 | embryo | 1hN | 0.24 | MC |
| SRR2338866 | endosprem | control | 1.56 | MC |
| SRR2338867 | endosprem | control | 1.39 | MC |
| SRR2338869 | endosprem | high_temperature | 0.77 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.30 | MC |
| SRR4457232 | flag_leaf | DAH4 | 1.07 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.85 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.85 | MC |
| SRR4457235 | flag_leaf | DAH12 | 0.76 | MC |
| SRR4457236 | flag_leaf | DAH12 | 1.34 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.44 | MC |
| SRR4457238 | flag_leaf | DAH20 | 1.33 | MC |
| SRR4457241 | flag_leaf | DAH28 | 0.71 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.47 | MC |
| SRR4457243 | flag_leaf | DAH36 | 1.10 | MC |
| SRR4457244 | flag_leaf | DAH36 | 1.08 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.92 | MC |
| SRR4457246 | flag_leaf | DAH44 | 0.37 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.37 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.98 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.77 | MC |
| SRR5856929 | leaf | control | 0.22 | MC |
| SRR5856930 | leaf | salt | 0.29 | MC |
| SRR5856932 | leaf | salt | 0.18 | MC |
| SRR5856935 | leaf | control | 0.29 | MC |
| SRR5856938 | leaf | salt | 0.51 | MC |
| SRR6168974 | leaf | none (control) | 0.45 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 0.49 | MC |
| SRR6168979 | leaf | none (control) | 0.40 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.42 | MC |
| SRR5126147 | root | "mock,1_day" | 4.15 | MC |
| SRR5126148 | root | "mock,1_day" | 3.06 | MC |
| SRR5126149 | root | "mock,1_day" | 4.54 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 3.42 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 2.71 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 1.64 | MC |
| SRR5126155 | root | "mock,7_days" | 2.36 | MC |
| SRR5126157 | root | "mock,7_days" | 5.42 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 4.58 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 2.14 | MC |
| SRR5126167 | root | "mock,14_days" | 1.66 | MC |
| SRR5126169 | root | "mock,14_days" | 4.11 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 2.12 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 3.76 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 1.43 | MC |
| SRR4947478 | root | control | 1.37 | MC |
| SRR4947479 | root | control | 0.84 | MC |
| SRR4947480 | root | control | 1.85 | MC |
| SRR4947481 | root | control | 4.21 | MC |
| SRR4947484 | root | Al | 3.05 | MC |
| SRR4947485 | root | Al | 2.22 | MC |
| SRR4947489 | root | control | 2.08 | MC |
| SRR4947490 | root | Al | 0.99 | MC |
| SRR4947492 | root | Al | 2.19 | MC |
| SRR4947493 | root | Al | 1.89 | MC |
| SRR4947506 | root | Al | 2.12 | MC |
| SRR4947509 | root | Al | 2.75 | MC |
| SRR1740432 | root_elongation_zone | wt | 2.66 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.83 | MC |
| SRR2154086 | seedling | wt | 0.39 | MC |
| SRR3098741 | seedling | wt | 0.37 | MC |
| SRR3098742 | seedling | wt | 0.44 | MC |
| SRR3098743 | seedling | wt | 0.79 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 4.23 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 4.98 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 6.07 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.61 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.35 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.29 | MC |