| SRR3745127 | anther | wt | 5.39 | MC |
| SRR5560727 | caryopsis | wild_type | 0.75 | MC |
| SRR5560728 | caryopsis | wild_type | 0.63 | MC |
| SRR5560729 | caryopsis | wild_type | 0.90 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.39 | MC |
| SRR7265403 | coleoptile | 2dN | 0.64 | MC |
| SRR7265404 | coleoptile | 2dN | 0.46 | MC |
| SRR7265405 | coleoptile | 2dN | 0.38 | MC |
| SRR7265409 | coleoptile | 3dN | 1.02 | MC |
| SRR7265410 | coleoptile | 3dN | 0.73 | MC |
| SRR7265411 | coleoptile | 3dN | 1.18 | MC |
| SRR7265412 | coleoptile | 4dA | 0.85 | MC |
| SRR7265415 | coleoptile | 4dN | 1.25 | MC |
| SRR7265416 | coleoptile | 4dN | 0.53 | MC |
| SRR7265417 | coleoptile | 4dN | 1.03 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.52 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 0.56 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 0.74 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 0.57 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.63 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 0.41 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.55 | MC |
| SRR7265374 | embryo | dry seed 0 h | 1.10 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.30 | MC |
| SRR7265376 | embryo | 1hA | 0.85 | MC |
| SRR7265378 | embryo | 1hA | 0.92 | MC |
| SRR7265379 | embryo | 1hN | 0.78 | MC |
| SRR7265381 | embryo | 1hN | 0.72 | MC |
| SRR7265382 | embryo | 3hA | 0.50 | MC |
| SRR7265386 | embryo | 3hN | 0.27 | MC |
| SRR7265387 | embryo | 3hN | 0.51 | MC |
| SRR7265391 | embryo | 12hN | 0.70 | MC |
| SRR7265397 | embryo | 24hN | 0.60 | MC |
| SRR2338867 | endosprem | control | 1.60 | MC |
| SRR2338868 | endosprem | high_temperature | 0.57 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.23 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.77 | MC |
| SRR1213691 | flower | wt | 2.62 | MC |
| SRR8060835 | leaf | wild_type | 0.46 | MC |
| SRR8240825 | leaf | wild_type | 0.25 | MC |
| SRR8240819 | leaf | wild_type | 0.29 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.43 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.80 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.81 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.79 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.48 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.80 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 0.96 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.38 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.54 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.04 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.01 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.74 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.01 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.83 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.86 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.08 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.33 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.65 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.64 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.35 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.47 | MC |
| SRR1213693 | leaf | wt | 0.68 | MC |
| SRR5856928 | leaf | control | 0.36 | MC |
| SRR5856929 | leaf | control | 0.21 | MC |
| SRR5856933 | leaf | control | 0.23 | MC |
| SRR5856934 | leaf | control | 0.24 | MC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 1.76 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 0.80 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 0.77 | MC |
| SRR5110446 | panicle | Dusk | 0.75 | MC |
| SRR5110448 | panicle | Dusk | 0.97 | MC |
| SRR5110452 | panicle | Dawn + 14h | 0.99 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.49 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 1.11 | MC |
| SRR5110459 | panicle | Dawn + 21h | 0.50 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.29 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.30 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 0.42 | MC |
| SRR5126147 | root | "mock,1_day" | 0.65 | MC |
| SRR5126148 | root | "mock,1_day" | 0.47 | MC |
| SRR5126149 | root | "mock,1_day" | 0.89 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.91 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.60 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.45 | MC |
| SRR5126153 | root | "mock,7_days" | 0.39 | MC |
| SRR5126155 | root | "mock,7_days" | 0.80 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.42 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.37 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.44 | MC |
| SRR5126165 | root | "mock,14_days" | 0.80 | MC |
| SRR5126167 | root | "mock,14_days" | 0.52 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 1.09 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.50 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.57 | MC |
| SRR1213695 | root | wt | 0.58 | MC |
| SRR4947487 | root | control | 0.47 | MC |
| SRR4947502 | root | control | 0.63 | MC |
| SRR4947506 | root | Al | 0.49 | MC |
| SRR4947508 | root | Al | 0.78 | MC |
| SRR6502092 | root | 100 mM NaCl | 0.40 | MC |
| SRR6502104 | root | 100 mM NaCl | 0.65 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.55 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.60 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.77 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.36 | MC |
| SRR6441554 | seedling | wild_type | 0.26 | MC |
| SRR2154086 | seedling | wt | 0.61 | MC |
| SRR2154083 | seedling | wt | 0.46 | MC |
| SRR2154085 | seedling | wt | 1.48 | MC |
| SRR3098741 | seedling | wt | 0.19 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 3.96 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 12.12 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.47 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.97 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 5.00 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.99 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.95 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.19 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.21 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.19 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.35 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.45 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.36 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.61 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.43 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.80 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.20 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.19 | MC |