| SRR6320498 | carpel | wt | 1.00 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.45 | MC |
| SRR7265400 | coleoptile | 2dA | 0.71 | MC |
| SRR7265401 | coleoptile | 2dA | 0.55 | MC |
| SRR7265402 | coleoptile | 2dA | 1.03 | MC |
| SRR7265403 | coleoptile | 2dN | 0.47 | MC |
| SRR7265404 | coleoptile | 2dN | 0.31 | MC |
| SRR7265405 | coleoptile | 2dN | 0.33 | MC |
| SRR7265406 | coleoptile | 3dA | 0.35 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 1.02 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 0.93 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 1.40 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 0.69 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 1.73 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 1.11 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 1.09 | MC |
| SRR7265379 | embryo | 1hN | 0.29 | MC |
| SRR7265381 | embryo | 1hN | 0.27 | MC |
| SRR7265383 | embryo | 3hA | 0.57 | MC |
| SRR7265388 | embryo | 12hA | 0.56 | MC |
| SRR7265389 | embryo | 12hA | 0.97 | MC |
| SRR7265390 | embryo | 12hA | 1.44 | MC |
| SRR7265392 | embryo | 12hN | 1.51 | MC |
| SRR7265393 | embryo | 12hN | 0.52 | MC |
| SRR7265394 | embryo | 24hA | 0.89 | MC |
| SRR7265395 | embryo | 24hA | 0.86 | MC |
| SRR7265396 | embryo | 24hA | 0.72 | MC |
| SRR7265397 | embryo | 24hN | 0.67 | MC |
| SRR2338868 | endosprem | high_temperature | 0.98 | MC |
| SRR4457240 | flag_leaf | DAH28 | 0.54 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.51 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.33 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 0.92 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.31 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.44 | MC |
| SRR5856929 | leaf | control | 0.17 | MC |
| SRR5856933 | leaf | control | 0.32 | MC |
| SRR5856935 | leaf | control | 0.36 | MC |
| SRR5856938 | leaf | salt | 0.20 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 0.75 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.24 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.21 | MC |
| SRR5110429 | panicle | Dawn | 0.65 | MC |
| SRR5110431 | panicle | Dawn | 0.92 | MC |
| SRR4947496 | root | control | 0.57 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 1.23 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 0.33 | MC |
| SRR5110438 | panicle | Dawn + 7h | 0.43 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 0.49 | MC |
| SRR5110445 | panicle | Dusk | 0.50 | MC |
| SRR5110448 | panicle | Dusk | 0.65 | MC |
| SRR5110452 | panicle | Dawn + 14h | 0.70 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.29 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 0.64 | MC |
| SRR5110457 | panicle | Dawn + 21h | 0.51 | MC |
| SRR5110459 | panicle | Dawn + 21h | 1.16 | MC |
| SRR1633182 | panicle | WT | 0.57 | MC |
| SRR1633185 | panicle | WT | 2.54 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.34 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 0.60 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 1.48 | MC |
| SRR5126147 | root | "mock,1_day" | 0.47 | MC |
| SRR5126148 | root | "mock,1_day" | 0.44 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.55 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.34 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.49 | MC |
| SRR5126153 | root | "mock,7_days" | 0.61 | MC |
| SRR5126155 | root | "mock,7_days" | 0.69 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.83 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 1.33 | MC |
| SRR5126165 | root | "mock,14_days" | 0.74 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.45 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.50 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.50 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.30 | MC |
| SRR4947480 | root | control | 0.92 | MC |
| SRR4947482 | root | Al | 0.41 | MC |
| SRR4947483 | root | Al | 0.65 | MC |
| SRR4947484 | root | Al | 0.72 | MC |
| SRR4947485 | root | Al | 1.75 | MC |
| SRR4947488 | root | control | 0.55 | MC |
| SRR4947491 | root | Al | 0.58 | MC |
| SRR4947494 | root | control | 1.47 | MC |
| SRR4947498 | root | Al | 1.72 | MC |
| SRR4947499 | root | Al | 1.28 | MC |
| SRR4947500 | root | Al | 1.03 | MC |
| SRR4947501 | root | Al | 0.84 | MC |
| SRR4947502 | root | control | 0.94 | MC |
| SRR4947504 | root | control | 0.75 | MC |
| SRR4947506 | root | Al | 0.52 | MC |
| SRR6502092 | root | 100 mM NaCl | 0.84 | MC |
| SRR6502093 | root | 100 mM NaCl | 0.59 | MC |
| SRR6502094 | root | control | 1.30 | MC |
| SRR6502104 | root | 100 mM NaCl | 1.04 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.98 | MC |
| SRR6502106 | root | control | 0.45 | MC |
| SRR6502108 | root | control | 0.80 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.88 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.31 | MC |
| SRR1740431 | root_elongation_zone | wt | 0.76 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.40 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.92 | MC |
| SRR1740428 | root_meristematic_zone | wt | 1.03 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.90 | MC |
| SRR1740430 | root_meristematic_zone | wt | 1.17 | MC |
| SRR6441554 | seedling | wild_type | 0.44 | MC |
| SRR2154086 | seedling | wt | 0.54 | MC |
| SRR2154083 | seedling | wt | 1.03 | MC |
| SRR2154084 | seedling | wt | 0.73 | MC |
| SRR2154087 | seedling | wt | 0.35 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.36 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 3.66 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 8.03 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 13.39 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 5.16 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.96 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 6.07 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.26 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.47 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.41 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.28 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 3.03 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 5.68 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 4.21 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 6.03 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 4.40 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 4.82 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 4.79 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 2.31 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 2.79 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 1.87 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 2.58 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 2.24 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 4.11 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 4.90 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 3.63 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 3.66 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 3.51 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 1.22 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 2.47 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 2.50 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 3.72 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 2.31 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 1.25 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 3.19 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 5.11 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 1.64 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.88 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.39 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.90 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 2.50 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 1.88 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 1.15 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 1.26 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 1.21 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 1.58 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.34 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.14 | MC |