| SRR358798 | callus | wt | 1.19 | MC |
| SRR6320498 | carpel | wt | 1.94 | MC |
| SRR5560728 | caryopsis | wild_type | 0.41 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.43 | MC |
| SRR4947495 | root | control | 0.76 | MC |
| SRR7265400 | coleoptile | 2dA | 0.62 | MC |
| SRR7265401 | coleoptile | 2dA | 1.14 | MC |
| SRR7265402 | coleoptile | 2dA | 0.75 | MC |
| SRR7265403 | coleoptile | 2dN | 0.93 | MC |
| SRR7265404 | coleoptile | 2dN | 0.50 | MC |
| SRR7265405 | coleoptile | 2dN | 0.61 | MC |
| SRR7265409 | coleoptile | 3dN | 1.31 | MC |
| SRR7265410 | coleoptile | 3dN | 1.25 | MC |
| SRR7265411 | coleoptile | 3dN | 1.32 | MC |
| SRR7265415 | coleoptile | 4dN | 1.51 | MC |
| SRR7265417 | coleoptile | 4dN | 0.83 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 1.64 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 1.04 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 0.51 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 0.79 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.75 | MC |
| SRR7265376 | embryo | 1hA | 0.45 | MC |
| SRR7265377 | embryo | 1hA | 0.38 | MC |
| SRR7265378 | embryo | 1hA | 0.28 | MC |
| SRR7265379 | embryo | 1hN | 0.37 | MC |
| SRR7265380 | embryo | 1hN | 0.50 | MC |
| SRR7265381 | embryo | 1hN | 0.40 | MC |
| SRR7265382 | embryo | 3hA | 0.78 | MC |
| SRR7265384 | embryo | 3hA | 0.51 | MC |
| SRR7265386 | embryo | 3hN | 0.40 | MC |
| SRR7265387 | embryo | 3hN | 0.24 | MC |
| SRR7265388 | embryo | 12hA | 0.92 | MC |
| SRR7265389 | embryo | 12hA | 1.40 | MC |
| SRR7265390 | embryo | 12hA | 1.22 | MC |
| SRR7265391 | embryo | 12hN | 1.17 | MC |
| SRR7265393 | embryo | 12hN | 1.28 | MC |
| SRR7265394 | embryo | 24hA | 0.82 | MC |
| SRR7265395 | embryo | 24hA | 0.97 | MC |
| SRR7265396 | embryo | 24hA | 1.22 | MC |
| SRR7265398 | embryo | 24hN | 1.01 | MC |
| SRR7265399 | embryo | 24hN | 0.71 | MC |
| SRR8060837 | leaf | wild_type | 0.26 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.20 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.33 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.59 | MC |
| SRR504365 | leaf | wt | 0.55 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.31 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.39 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.32 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.36 | MC |
| SRR1213692 | leaf | wt | 0.33 | MC |
| SRR1213693 | leaf | wt | 0.68 | MC |
| SRR5856927 | leaf | control | 0.39 | MC |
| SRR5856928 | leaf | control | 0.26 | MC |
| SRR5856931 | leaf | salt | 0.25 | MC |
| SRR5856933 | leaf | control | 0.40 | MC |
| SRR5856935 | leaf | control | 0.27 | MC |
| SRR5856936 | leaf | salt | 0.37 | MC |
| SRR5856937 | leaf | salt | 0.31 | MC |
| SRR5856938 | leaf | salt | 0.30 | MC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 1.23 | MC |
| SRR6168973 | leaf | none (control) | 0.86 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 0.66 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 0.46 | MC |
| SRR8582890 | panicle | AM | 0.21 | MC |
| SRR5110430 | panicle | Dawn | 1.89 | MC |
| SRR5110431 | panicle | Dawn | 3.10 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 4.49 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 2.62 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 1.86 | MC |
| SRR5110439 | panicle | Dawn + 7h | 5.40 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 1.82 | MC |
| SRR5110445 | panicle | Dusk | 3.65 | MC |
| SRR5110449 | panicle | Dawn + 14h | 1.59 | MC |
| SRR5110458 | panicle | Dawn + 21h | 2.55 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.35 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.71 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.72 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 0.51 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 1.13 | MC |
| SRR5126147 | root | "mock,1_day" | 0.61 | MC |
| SRR5126148 | root | "mock,1_day" | 0.65 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.51 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.36 | MC |
| SRR5126153 | root | "mock,7_days" | 0.85 | MC |
| SRR5126155 | root | "mock,7_days" | 0.74 | MC |
| SRR5126157 | root | "mock,7_days" | 0.70 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 1.40 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 1.01 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.72 | MC |
| SRR5126165 | root | "mock,14_days" | 0.63 | MC |
| SRR5126169 | root | "mock,14_days" | 0.78 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.78 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.52 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 1.64 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.37 | MC |
| SRR1213695 | root | wt | 0.58 | MC |
| SRR4947483 | root | Al | 0.82 | MC |
| SRR4947485 | root | Al | 0.63 | MC |
| SRR4947494 | root | control | 0.57 | MC |
| SRR4947498 | root | Al | 0.49 | MC |
| SRR4947501 | root | Al | 0.93 | MC |
| SRR4947503 | root | control | 0.51 | MC |
| SRR4947505 | root | control | 0.52 | MC |
| SRR4947507 | root | Al | 0.85 | MC |
| SRR4947509 | root | Al | 0.62 | MC |
| SRR6502106 | root | control | 0.43 | MC |
| SRR1740435 | root_differentiation_zone | wt | 2.01 | MC |
| SRR1740436 | root_differentiation_zone | wt | 1.84 | MC |
| SRR1740431 | root_elongation_zone | wt | 0.67 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.89 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.40 | MC |
| SRR1740428 | root_meristematic_zone | wt | 1.11 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.90 | MC |
| SRR1740430 | root_meristematic_zone | wt | 1.14 | MC |
| SRR2154087 | seedling | wt | 2.35 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.78 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 6.30 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 8.06 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.01 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 5.33 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.18 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.36 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.19 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.53 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.46 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 0.46 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.48 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.40 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.31 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 3.14 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 4.21 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 3.90 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 3.55 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 4.66 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 5.53 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 2.32 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 4.48 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 2.78 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 2.78 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 3.63 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 2.25 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 3.14 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 5.34 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 6.05 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 4.41 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 3.65 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 3.86 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 2.86 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 5.95 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 2.34 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 5.04 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 2.89 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 1.20 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 1.64 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 2.34 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 1.23 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 1.52 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 1.73 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 2.01 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 1.70 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 1.67 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 2.01 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 1.27 | MC |