| SRR4457250 | 2nd_leaf | DAH4 | 0.54 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 1.64 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 2.15 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 3.39 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 1.49 | MC |
| SRR5560727 | caryopsis | wild_type | 1.82 | MC |
| SRR5560728 | caryopsis | wild_type | 1.32 | MC |
| SRR5560729 | caryopsis | wild_type | 0.46 | MC |
| SRR7265402 | coleoptile | 2dA | 0.58 | MC |
| SRR7265406 | coleoptile | 3dA | 0.60 | MC |
| SRR7265407 | coleoptile | 3dA | 0.67 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 0.52 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 0.82 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.83 | MC |
| SRR7265389 | embryo | 12hA | 0.96 | MC |
| SRR7265390 | embryo | 12hA | 1.31 | MC |
| SRR7265396 | embryo | 24hA | 0.79 | MC |
| SRR2338868 | endosprem | high_temperature | 0.90 | MC |
| SRR4457231 | flag_leaf | DAH4 | 1.95 | MC |
| SRR4457232 | flag_leaf | DAH4 | 2.19 | MC |
| SRR4457233 | flag_leaf | DAH4 | 2.06 | MC |
| SRR4457246 | flag_leaf | DAH44 | 3.93 | MC |
| SRR4457247 | flag_leaf | DAH44 | 3.18 | MC |
| SRR4457248 | flag_leaf | DAH44 | 3.34 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.33 | MC |
| SRR1213691 | flower | wt | 0.49 | MC |
| SRR8060835 | leaf | wild_type | 0.78 | MC |
| SRR8060836 | leaf | wild_type | 1.23 | MC |
| SRR8060837 | leaf | wild_type | 1.36 | MC |
| SRR8240825 | leaf | wild_type | 2.15 | MC |
| SRR8240820 | leaf | wild_type | 0.73 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 1.00 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 1.26 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 1.15 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 4.44 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 6.70 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 4.97 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 3.76 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 4.69 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 3.34 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 7.59 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 6.90 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 5.28 | MC |
| SRR504365 | leaf | wt | 0.48 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 3.01 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 1.24 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 2.71 | MC |
| SRR8611900 | leaf | Non-inoculated | 2.92 | MC |
| SRR8611901 | leaf | Non-inoculated | 3.33 | MC |
| SRR8611902 | leaf | Non-inoculated | 2.50 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.66 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.84 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.68 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.40 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.24 | MC |
| SRR1213692 | leaf | wt | 1.75 | MC |
| SRR1213693 | leaf | wt | 1.12 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 2.12 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 2.17 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 3.86 | MC |
| SRR6502100 | leaf | control | 1.74 | MC |
| SRR6502101 | leaf | control | 0.96 | MC |
| SRR6502102 | leaf | control | 3.49 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 1.24 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.85 | MC |
| SRR8582893 | panicle | PM | 0.35 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.26 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.51 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.77 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.32 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 1.50 | MC |
| SRR5126148 | root | "mock,1_day" | 3.40 | MC |
| SRR5126149 | root | "mock,1_day" | 3.87 | MC |
| SRR5126153 | root | "mock,7_days" | 3.54 | MC |
| SRR5126155 | root | "mock,7_days" | 3.17 | MC |
| SRR5126157 | root | "mock,7_days" | 4.76 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 5.15 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 4.83 | MC |
| SRR5126165 | root | "mock,14_days" | 3.19 | MC |
| SRR5126167 | root | "mock,14_days" | 3.30 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 1.57 | MC |
| SRR1213694 | root | wt | 1.61 | MC |
| SRR1213695 | root | wt | 2.04 | MC |
| SRR4947508 | root | Al | 0.56 | MC |
| SRR2154086 | seedling | wt | 1.33 | MC |
| SRR2154082 | seedling | wt | 3.17 | MC |
| SRR2154084 | seedling | wt | 1.75 | MC |
| SRR2154087 | seedling | wt | 1.85 | MC |
| SRR3098741 | seedling | wt | 0.28 | MC |
| SRR3098742 | seedling | wt | 0.40 | MC |
| SRR3098743 | seedling | wt | 0.82 | MC |
| SRR2857719 | seedling | drought_stress_0h | 3.12 | MC |
| SRR2857720 | seedling | drought_stress_1h | 1.22 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.25 | MC |
| SRR1944583 | seedling | no_treatment | 3.21 | MC |
| SRR358794 | seedling | wt | 3.05 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 5.94 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.63 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 6.74 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 2.90 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 2.38 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 2.33 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 2.42 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.91 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.98 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.30 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.83 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.07 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 2.46 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 1.97 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 2.02 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.58 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 2.43 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 2.55 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.02 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.30 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 1.34 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.76 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 0.65 | MC |