| SRR4457251 | 2nd_leaf | DAH4 | 0.35 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.59 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 0.53 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.49 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 0.53 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 0.50 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.34 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.26 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 0.76 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 0.86 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 0.93 | MC |
| SRR5560727 | caryopsis | wild_type | 0.44 | MC |
| SRR5560728 | caryopsis | wild_type | 0.54 | MC |
| SRR5560729 | caryopsis | wild_type | 0.70 | MC |
| SRR4947495 | root | control | 0.72 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 0.42 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 0.64 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 0.36 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 0.54 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.48 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.43 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.43 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.57 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.35 | MC |
| SRR4457235 | flag_leaf | DAH12 | 0.46 | MC |
| SRR4457236 | flag_leaf | DAH12 | 0.49 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.28 | MC |
| SRR4457240 | flag_leaf | DAH28 | 0.55 | MC |
| SRR4457241 | flag_leaf | DAH28 | 0.47 | MC |
| SRR4457243 | flag_leaf | DAH36 | 0.64 | MC |
| SRR4457244 | flag_leaf | DAH36 | 0.63 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.92 | MC |
| SRR4457246 | flag_leaf | DAH44 | 0.78 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.57 | MC |
| SRR8060835 | leaf | wild_type | 0.64 | MC |
| SRR8060836 | leaf | wild_type | 0.82 | MC |
| SRR8060837 | leaf | wild_type | 0.78 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.68 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.63 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.47 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.56 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.51 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.19 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.46 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.34 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.31 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.53 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.83 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.04 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.30 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.60 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.39 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.39 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.61 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 0.74 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.69 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 0.52 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 0.68 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 1.08 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 0.95 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 0.53 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 0.69 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 1.10 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 0.96 | MC |
| SRR1761528 | leaf | drought | 0.53 | MC |
| SRR1761529 | leaf | drought | 0.68 | MC |
| SRR1761530 | leaf | control | 1.09 | MC |
| SRR1761531 | leaf | control | 0.95 | MC |
| SRR504365 | leaf | wt | 0.85 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.60 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 0.46 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 0.42 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 0.48 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.27 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 0.34 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 0.49 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.32 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.28 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.40 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.25 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 0.33 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.52 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.50 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.56 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.53 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.40 | MC |
| SRR1213692 | leaf | wt | 1.99 | MC |
| SRR1213693 | leaf | wt | 1.25 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 0.33 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 0.43 | MC |
| SRR6502088 | leaf | control | 0.31 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 0.50 | MC |
| SRR5856927 | leaf | control | 0.40 | MC |
| SRR5856928 | leaf | control | 0.70 | MC |
| SRR5856929 | leaf | control | 0.39 | MC |
| SRR5856933 | leaf | control | 0.46 | MC |
| SRR5856934 | leaf | control | 0.37 | MC |
| SRR5856935 | leaf | control | 0.53 | MC |
| SRR5856936 | leaf | salt | 0.13 | MC |
| SRR6053395 | leaf | gibberellic acid (GA) | 1.71 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 2.47 | MC |
| SRR8582893 | panicle | PM | 0.24 | MC |
| SRR5110429 | panicle | Dawn | 0.60 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 0.27 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 0.52 | MC |
| SRR5110437 | panicle | Dawn + 7h | 0.48 | MC |
| SRR5110438 | panicle | Dawn + 7h | 0.46 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 0.59 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 0.68 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 1.17 | MC |
| SRR5110445 | panicle | Dusk | 0.70 | MC |
| SRR5110446 | panicle | Dusk | 0.69 | MC |
| SRR5110447 | panicle | Dusk | 0.64 | MC |
| SRR5110448 | panicle | Dusk | 1.06 | MC |
| SRR5110450 | panicle | Dawn + 14h | 0.60 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.79 | MC |
| SRR5110452 | panicle | Dawn + 14h | 0.89 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.48 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 0.70 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 0.81 | MC |
| SRR5110458 | panicle | Dawn + 21h | 0.41 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.17 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.25 | MC |
| SRR1633182 | panicle | WT | 0.75 | MC |
| SRR1633185 | panicle | WT | 1.23 | MC |
| SRR5126147 | root | "mock,1_day" | 0.43 | MC |
| SRR5126149 | root | "mock,1_day" | 0.55 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.57 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.78 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.34 | MC |
| SRR5126153 | root | "mock,7_days" | 0.49 | MC |
| SRR5126155 | root | "mock,7_days" | 0.43 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.65 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.54 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.50 | MC |
| SRR5126165 | root | "mock,14_days" | 0.51 | MC |
| SRR5126167 | root | "mock,14_days" | 0.45 | MC |
| SRR5126169 | root | "mock,14_days" | 0.38 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.71 | MC |
| SRR1213694 | root | wt | 0.75 | MC |
| SRR1213695 | root | wt | 2.79 | MC |
| SRR4947479 | root | control | 0.56 | MC |
| SRR4947482 | root | Al | 0.48 | MC |
| SRR4947487 | root | control | 0.50 | MC |
| SRR4947491 | root | Al | 0.74 | MC |
| SRR4947498 | root | Al | 0.88 | MC |
| SRR4947499 | root | Al | 0.70 | MC |
| SRR4947502 | root | control | 0.66 | MC |
| SRR4947503 | root | control | 0.85 | MC |
| SRR4947506 | root | Al | 0.40 | MC |
| SRR4947507 | root | Al | 0.98 | MC |
| SRR6502093 | root | 100 mM NaCl | 0.46 | MC |
| SRR6502104 | root | 100 mM NaCl | 0.37 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.23 | MC |
| SRR2154086 | seedling | wt | 0.42 | MC |
| SRR2154082 | seedling | wt | 0.89 | MC |
| SRR2154083 | seedling | wt | 0.60 | MC |
| SRR2154084 | seedling | wt | 0.71 | MC |
| SRR2154087 | seedling | wt | 0.45 | MC |
| SRR3098741 | seedling | wt | 0.35 | MC |
| SRR3098742 | seedling | wt | 0.25 | MC |
| SRR3098743 | seedling | wt | 0.20 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.39 | MC |
| SRR358791 | seedling | wt | 0.70 | MC |
| SRR358792 | seedling | wt | 0.68 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 5.08 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 6.27 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 3.88 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 1.91 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 2.85 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.31 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.24 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.29 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.30 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.33 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 0.30 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 0.40 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 0.33 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 0.51 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.33 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.37 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.65 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.40 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.60 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.46 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.72 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.35 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.39 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.33 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.31 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.47 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.32 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.28 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 1.39 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 0.77 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 0.79 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 0.71 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.56 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 0.49 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 0.71 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 0.73 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 0.53 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.54 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.54 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.45 | MC |