| SRR4457260 | 2nd_leaf | DAH28 | 0.29 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 0.59 | MC |
| SRR6320473 | carpel | wt | 2.31 | MC |
| SRR6320498 | carpel | wt | 3.30 | MC |
| SRR5560727 | caryopsis | wild_type | 0.30 | MC |
| SRR5560728 | caryopsis | wild_type | 0.42 | MC |
| SRR5560729 | caryopsis | wild_type | 0.47 | MC |
| SRR7265400 | coleoptile | 2dA | 0.56 | MC |
| SRR7265401 | coleoptile | 2dA | 0.57 | MC |
| SRR7265402 | coleoptile | 2dA | 0.57 | MC |
| SRR7265403 | coleoptile | 2dN | 0.44 | MC |
| SRR7265405 | coleoptile | 2dN | 0.46 | MC |
| SRR7265406 | coleoptile | 3dA | 0.86 | MC |
| SRR7265407 | coleoptile | 3dA | 0.64 | MC |
| SRR7265409 | coleoptile | 3dN | 1.46 | MC |
| SRR7265410 | coleoptile | 3dN | 0.44 | MC |
| SRR7265411 | coleoptile | 3dN | 0.45 | MC |
| SRR7265413 | coleoptile | 4dA | 0.68 | MC |
| SRR7265415 | coleoptile | 4dN | 0.53 | MC |
| SRR7265417 | coleoptile | 4dN | 0.67 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 0.95 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 0.58 | MC |
| SRR7265382 | embryo | 3hA | 3.40 | MC |
| SRR7265384 | embryo | 3hA | 4.12 | MC |
| SRR7265388 | embryo | 12hA | 0.82 | MC |
| SRR7265389 | embryo | 12hA | 1.04 | MC |
| SRR7265390 | embryo | 12hA | 0.79 | MC |
| SRR7265391 | embryo | 12hN | 0.94 | MC |
| SRR7265392 | embryo | 12hN | 0.69 | MC |
| SRR7265393 | embryo | 12hN | 0.58 | MC |
| SRR7265396 | embryo | 24hA | 0.59 | MC |
| SRR7265397 | embryo | 24hN | 0.90 | MC |
| SRR7265398 | embryo | 24hN | 0.59 | MC |
| SRR7265399 | embryo | 24hN | 0.78 | MC |
| SRR4457246 | flag_leaf | DAH44 | 0.36 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.58 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.73 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.55 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.64 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.02 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.42 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.84 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.61 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.63 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.45 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.58 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 0.46 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.58 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.49 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.59 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.77 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.61 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.06 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.49 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.40 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.81 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.51 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.67 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 0.45 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 0.45 | MC |
| SRR1761529 | leaf | drought | 0.45 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.53 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 0.38 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 0.28 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 0.33 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.46 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.40 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 0.34 | MC |
| SRR1213692 | leaf | wt | 0.41 | MC |
| SRR1213693 | leaf | wt | 0.47 | MC |
| SRR5856931 | leaf | salt | 0.22 | MC |
| SRR5856932 | leaf | salt | 0.24 | MC |
| SRR5856936 | leaf | salt | 0.21 | MC |
| SRR5856937 | leaf | salt | 0.20 | MC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 1.12 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 1.07 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 0.92 | MC |
| SRR6168973 | leaf | none (control) | 0.36 | MC |
| SRR6168974 | leaf | none (control) | 0.35 | MC |
| SRR6168975 | leaf | none (control) | 0.34 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 0.73 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 2.05 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 0.34 | MC |
| SRR6168979 | leaf | none (control) | 1.33 | MC |
| SRR6168980 | leaf | none (control) | 0.73 | MC |
| SRR6168981 | leaf | none (control) | 1.34 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.93 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 1.79 | MC |
| SRR8582890 | panicle | AM | 0.19 | MC |
| SRR4947496 | root | control | 0.62 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 0.34 | MC |
| SRR5110437 | panicle | Dawn + 7h | 0.44 | MC |
| SRR5110438 | panicle | Dawn + 7h | 0.50 | MC |
| SRR5110440 | panicle | Dawn + 7h | 0.79 | MC |
| SRR5110446 | panicle | Dusk | 0.50 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.25 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.19 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 2.00 | MC |
| SRR1633182 | panicle | WT | 1.74 | MC |
| SRR1633185 | panicle | WT | 2.39 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.22 | MC |
| SRR5126167 | root | "mock,14_days" | 0.34 | MC |
| SRR1213694 | root | wt | 0.36 | MC |
| SRR1213695 | root | wt | 0.25 | MC |
| SRR4947480 | root | control | 0.94 | MC |
| SRR4947481 | root | control | 1.65 | MC |
| SRR4947483 | root | Al | 0.47 | MC |
| SRR4947484 | root | Al | 1.77 | MC |
| SRR4947485 | root | Al | 1.12 | MC |
| SRR4947490 | root | Al | 0.49 | MC |
| SRR4947491 | root | Al | 1.76 | MC |
| SRR4947492 | root | Al | 1.52 | MC |
| SRR4947493 | root | Al | 1.18 | MC |
| SRR4947497 | root | control | 0.65 | MC |
| SRR4947498 | root | Al | 1.11 | MC |
| SRR4947500 | root | Al | 2.37 | MC |
| SRR4947501 | root | Al | 1.44 | MC |
| SRR4947502 | root | control | 0.47 | MC |
| SRR4947505 | root | control | 0.93 | MC |
| SRR4947506 | root | Al | 0.46 | MC |
| SRR4947507 | root | Al | 1.84 | MC |
| SRR4947508 | root | Al | 1.17 | MC |
| SRR4947509 | root | Al | 0.79 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.36 | MC |
| SRR1740436 | root_differentiation_zone | wt | 1.24 | MC |
| SRR1740431 | root_elongation_zone | wt | 0.43 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.32 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.38 | MC |
| SRR6441554 | seedling | wild_type | 0.32 | MC |
| SRR6441555 | seedling | wild_type | 0.35 | MC |
| SRR2154086 | seedling | wt | 0.80 | MC |
| SRR2154082 | seedling | wt | 0.39 | MC |
| SRR2154083 | seedling | wt | 0.58 | MC |
| SRR2154085 | seedling | wt | 1.27 | MC |
| SRR2154087 | seedling | wt | 0.68 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.45 | MC |
| SRR1944583 | seedling | no_treatment | 0.63 | MC |
| SRR358791 | seedling | wt | 1.25 | MC |
| SRR358792 | seedling | wt | 0.80 | MC |
| SRR358793 | seedling | wt | 0.62 | MC |
| SRR358794 | seedling | wt | 1.15 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 1.71 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 3.43 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 4.10 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 11.18 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.55 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.79 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.41 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.03 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.94 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.46 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.47 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.59 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.21 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.38 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.36 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 0.30 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 0.50 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 0.31 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 0.45 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.54 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.33 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 1.10 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 1.30 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.13 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.38 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.00 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.24 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.49 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 0.61 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.56 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.41 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.86 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.48 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.21 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.19 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.22 | MC |