| SRR7265400 | coleoptile | 2dA | 1.47 | MC |
| SRR7265401 | coleoptile | 2dA | 1.34 | MC |
| SRR7265402 | coleoptile | 2dA | 1.30 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 1.64 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.67 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.52 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 2.48 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 0.72 | MC |
| SRR7265375 | embryo | dry seed 0 h | 1.64 | MC |
| SRR7265377 | embryo | 1hA | 3.31 | MC |
| SRR7265380 | embryo | 1hN | 3.67 | MC |
| SRR7265382 | embryo | 3hA | 3.57 | MC |
| SRR7265383 | embryo | 3hA | 3.99 | MC |
| SRR7265384 | embryo | 3hA | 3.54 | MC |
| SRR7265385 | embryo | 3hN | 3.89 | MC |
| SRR7265386 | embryo | 3hN | 2.74 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.87 | MC |
| SRR1213691 | flower | wt | 0.43 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.63 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 0.38 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 0.47 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 0.44 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 0.44 | MC |
| SRR1761529 | leaf | drought | 0.44 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 0.52 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 0.39 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.31 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.51 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.54 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.58 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.68 | MC |
| SRR5856928 | leaf | control | 0.23 | MC |
| SRR5856933 | leaf | control | 0.54 | MC |
| SRR5856934 | leaf | control | 0.50 | MC |
| SRR5856935 | leaf | control | 0.33 | MC |
| SRR5856936 | leaf | salt | 0.39 | MC |
| SRR5856937 | leaf | salt | 0.24 | MC |
| SRR5856938 | leaf | salt | 0.20 | MC |
| SRR6168979 | leaf | none (control) | 0.26 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.26 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.23 | MC |
| SRR8582889 | panicle | AM | 0.12 | MC |
| SRR4947496 | root | control | 1.39 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.26 | MC |
| SRR1633182 | panicle | WT | 1.24 | MC |
| SRR1633185 | panicle | WT | 0.69 | MC |
| SRR5126148 | root | "mock,1_day" | 2.94 | MC |
| SRR5126149 | root | "mock,1_day" | 1.90 | MC |
| SRR5126153 | root | "mock,7_days" | 4.00 | MC |
| SRR5126157 | root | "mock,7_days" | 0.61 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 3.05 | MC |
| SRR5126165 | root | "mock,14_days" | 3.48 | MC |
| SRR5126169 | root | "mock,14_days" | 2.54 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 2.17 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 2.40 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.84 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 1.49 | MC |
| SRR1213694 | root | wt | 1.22 | MC |
| SRR4947480 | root | control | 0.67 | MC |
| SRR4947484 | root | Al | 0.64 | MC |
| SRR4947485 | root | Al | 1.12 | MC |
| SRR4947488 | root | control | 1.19 | MC |
| SRR4947489 | root | control | 0.90 | MC |
| SRR4947492 | root | Al | 0.94 | MC |
| SRR4947493 | root | Al | 0.97 | MC |
| SRR4947504 | root | control | 0.69 | MC |
| SRR4947505 | root | control | 0.79 | MC |
| SRR4947508 | root | Al | 1.06 | MC |
| SRR4947509 | root | Al | 0.73 | MC |
| SRR6502091 | root | 100 mM NaCl | 2.30 | MC |
| SRR6502092 | root | 100 mM NaCl | 1.49 | MC |
| SRR6502093 | root | 100 mM NaCl | 0.89 | MC |
| SRR6502094 | root | control | 1.72 | MC |
| SRR6502095 | root | control | 1.81 | MC |
| SRR6502096 | root | control | 1.19 | MC |
| SRR6502103 | root | 100 mM NaCl | 1.33 | MC |
| SRR6502104 | root | 100 mM NaCl | 1.46 | MC |
| SRR6502105 | root | 100 mM NaCl | 1.38 | MC |
| SRR6502106 | root | control | 2.35 | MC |
| SRR6502107 | root | control | 2.07 | MC |
| SRR6502108 | root | control | 4.39 | MC |
| SRR1740434 | root_differentiation_zone | wt | 3.45 | MC |
| SRR2154086 | seedling | wt | 0.50 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 1.33 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 3.93 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 3.95 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.67 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 1.96 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.84 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 6.20 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.27 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.41 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.30 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 1.40 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 1.03 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 1.21 | MC |