| SRR4457251 | 2nd_leaf | DAH4 | 0.37 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.47 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 1.10 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 0.69 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 0.81 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 1.14 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 0.48 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 0.66 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 0.50 | MC |
| SRR3745125 | anther | wt | 2.17 | MC |
| SRR3745126 | anther | wt | 0.85 | MC |
| SRR3745127 | anther | wt | 1.23 | MC |
| SRR6320473 | carpel | wt | 1.36 | MC |
| SRR6320498 | carpel | wt | 1.69 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.65 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.70 | MC |
| SRR7265400 | coleoptile | 2dA | 1.31 | MC |
| SRR7265401 | coleoptile | 2dA | 1.11 | MC |
| SRR7265402 | coleoptile | 2dA | 1.14 | MC |
| SRR7265403 | coleoptile | 2dN | 0.73 | MC |
| SRR7265404 | coleoptile | 2dN | 1.23 | MC |
| SRR7265405 | coleoptile | 2dN | 0.70 | MC |
| SRR7265406 | coleoptile | 3dA | 0.75 | MC |
| SRR7265407 | coleoptile | 3dA | 0.68 | MC |
| SRR7265408 | coleoptile | 3dA | 0.39 | MC |
| SRR7265409 | coleoptile | 3dN | 0.59 | MC |
| SRR7265411 | coleoptile | 3dN | 0.39 | MC |
| SRR7265412 | coleoptile | 4dA | 0.52 | MC |
| SRR7265413 | coleoptile | 4dA | 0.90 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 0.50 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 0.76 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 0.85 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 0.93 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 2.68 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 0.39 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 0.46 | MC |
| SRR7265373 | embryo | dry seed 0 h | 2.07 | MC |
| SRR7265374 | embryo | dry seed 0 h | 1.96 | MC |
| SRR7265375 | embryo | dry seed 0 h | 1.18 | MC |
| SRR7265376 | embryo | 1hA | 1.83 | MC |
| SRR7265377 | embryo | 1hA | 1.23 | MC |
| SRR7265378 | embryo | 1hA | 1.60 | MC |
| SRR7265379 | embryo | 1hN | 1.97 | MC |
| SRR7265380 | embryo | 1hN | 2.08 | MC |
| SRR7265381 | embryo | 1hN | 2.05 | MC |
| SRR7265382 | embryo | 3hA | 0.94 | MC |
| SRR7265383 | embryo | 3hA | 0.98 | MC |
| SRR7265384 | embryo | 3hA | 1.55 | MC |
| SRR7265385 | embryo | 3hN | 2.06 | MC |
| SRR7265386 | embryo | 3hN | 2.25 | MC |
| SRR7265387 | embryo | 3hN | 1.56 | MC |
| SRR7265388 | embryo | 12hA | 2.20 | MC |
| SRR7265389 | embryo | 12hA | 2.84 | MC |
| SRR7265390 | embryo | 12hA | 2.82 | MC |
| SRR7265391 | embryo | 12hN | 1.25 | MC |
| SRR7265392 | embryo | 12hN | 0.88 | MC |
| SRR7265393 | embryo | 12hN | 1.38 | MC |
| SRR7265394 | embryo | 24hA | 1.93 | MC |
| SRR7265395 | embryo | 24hA | 1.94 | MC |
| SRR7265396 | embryo | 24hA | 1.69 | MC |
| SRR7265397 | embryo | 24hN | 1.22 | MC |
| SRR7265398 | embryo | 24hN | 2.24 | MC |
| SRR7265399 | embryo | 24hN | 1.19 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.60 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.34 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.52 | MC |
| SRR4457235 | flag_leaf | DAH12 | 0.33 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.56 | MC |
| SRR4457238 | flag_leaf | DAH20 | 1.12 | MC |
| SRR4457239 | flag_leaf | DAH20 | 0.54 | MC |
| SRR4457240 | flag_leaf | DAH28 | 0.89 | MC |
| SRR4457241 | flag_leaf | DAH28 | 1.03 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.94 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.33 | MC |
| SRR4457246 | flag_leaf | DAH44 | 1.26 | MC |
| SRR4457247 | flag_leaf | DAH44 | 1.46 | MC |
| SRR4457248 | flag_leaf | DAH44 | 1.04 | MC |
| SRR8060835 | leaf | wild_type | 1.08 | MC |
| SRR8060836 | leaf | wild_type | 1.99 | MC |
| SRR8060837 | leaf | wild_type | 0.81 | MC |
| SRR8240824 | leaf | wild_type | 1.19 | MC |
| SRR8240825 | leaf | wild_type | 0.66 | MC |
| SRR8240826 | leaf | wild_type | 0.35 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.93 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.63 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 0.68 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 1.30 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.49 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.47 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.19 | MC |
| SRR504365 | leaf | wt | 0.63 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.28 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 0.39 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 0.34 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.61 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.44 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.43 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.73 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.73 | MC |
| SRR1213692 | leaf | wt | 0.60 | MC |
| SRR1213693 | leaf | wt | 0.37 | MC |
| SRR6502088 | leaf | control | 0.31 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 0.81 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 0.94 | MC |
| SRR6502100 | leaf | control | 0.54 | MC |
| SRR6502102 | leaf | control | 0.45 | MC |
| SRR5856929 | leaf | control | 0.26 | MC |
| SRR5856932 | leaf | salt | 0.33 | MC |
| SRR5856933 | leaf | control | 0.38 | MC |
| SRR5856934 | leaf | control | 0.45 | MC |
| SRR5856935 | leaf | control | 0.46 | MC |
| SRR5856936 | leaf | salt | 0.17 | MC |
| SRR5856937 | leaf | salt | 0.31 | MC |
| SRR5856938 | leaf | salt | 0.25 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 1.10 | MC |
| SRR6168973 | leaf | none (control) | 0.29 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.27 | MC |
| SRR8582893 | panicle | PM | 0.22 | MC |
| SRR5110429 | panicle | Dawn | 2.49 | MC |
| SRR5110430 | panicle | Dawn | 0.81 | MC |
| SRR5110431 | panicle | Dawn | 0.90 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 1.10 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 1.45 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 1.80 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 2.50 | MC |
| SRR5110437 | panicle | Dawn + 7h | 1.01 | MC |
| SRR5110438 | panicle | Dawn + 7h | 2.30 | MC |
| SRR5110439 | panicle | Dawn + 7h | 1.97 | MC |
| SRR5110440 | panicle | Dawn + 7h | 4.10 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 2.60 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 2.52 | MC |
| SRR5110445 | panicle | Dusk | 0.99 | MC |
| SRR5110447 | panicle | Dusk | 2.11 | MC |
| SRR5110448 | panicle | Dusk | 5.23 | MC |
| SRR5110450 | panicle | Dawn + 14h | 1.09 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 3.14 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 2.80 | MC |
| SRR5110458 | panicle | Dawn + 21h | 1.98 | MC |
| SRR5110460 | panicle | Dawn + 21h | 3.61 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.34 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.24 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.67 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.36 | MC |
| SRR5126148 | root | "mock,1_day" | 0.42 | MC |
| SRR5126149 | root | "mock,1_day" | 0.61 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.63 | MC |
| SRR5126153 | root | "mock,7_days" | 0.44 | MC |
| SRR5126155 | root | "mock,7_days" | 0.64 | MC |
| SRR5126157 | root | "mock,7_days" | 1.69 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.69 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.98 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 1.75 | MC |
| SRR5126165 | root | "mock,14_days" | 0.61 | MC |
| SRR5126167 | root | "mock,14_days" | 0.58 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 1.49 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.40 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 1.09 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.31 | MC |
| SRR1213695 | root | wt | 0.37 | MC |
| SRR4947482 | root | Al | 0.94 | MC |
| SRR6502103 | root | 100 mM NaCl | 3.11 | MC |
| SRR6502104 | root | 100 mM NaCl | 0.75 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.74 | MC |
| SRR6502106 | root | control | 0.53 | MC |
| SRR6502108 | root | control | 0.60 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.70 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.22 | MC |
| SRR1740431 | root_elongation_zone | wt | 0.70 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.43 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.21 | MC |
| SRR1740428 | root_meristematic_zone | wt | 0.58 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.23 | MC |
| SRR6441554 | seedling | wild_type | 0.45 | MC |
| SRR2154086 | seedling | wt | 0.55 | MC |
| SRR2154082 | seedling | wt | 2.97 | MC |
| SRR2154084 | seedling | wt | 1.55 | MC |
| SRR2154087 | seedling | wt | 0.85 | MC |
| SRR3098741 | seedling | wt | 0.28 | MC |
| SRR3098742 | seedling | wt | 1.15 | MC |
| SRR3098743 | seedling | wt | 0.75 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.76 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.48 | MC |
| SRR1944583 | seedling | no_treatment | 0.42 | MC |
| SRR358792 | seedling | wt | 1.04 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.79 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 3.39 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 9.10 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.16 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 1.67 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 6.51 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.82 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.99 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.70 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.42 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.41 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.68 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.52 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.45 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.36 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 1.14 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 1.01 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.96 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.51 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.35 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.35 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.42 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.88 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.37 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.77 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 0.66 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 0.74 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 0.49 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 1.67 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 0.96 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 0.84 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.33 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.45 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.79 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 1.20 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 1.33 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 3.79 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 4.58 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 3.56 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 1.27 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 1.92 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 1.95 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 1.03 | MC |