| SRR358795 | callus | wt | 8.91 | MC |
| SRR358796 | callus | wt | 4.32 | MC |
| SRR358798 | callus | wt | 5.45 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 2.84 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 3.87 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 1.37 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 2.59 | MC |
| SRR7265402 | coleoptile | 2dA | 0.50 | MC |
| SRR7265406 | coleoptile | 3dA | 0.38 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 1.35 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.78 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 0.34 | MC |
| SRR7265395 | embryo | 24hA | 0.49 | MC |
| SRR7265396 | embryo | 24hA | 0.50 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 2.99 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.72 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 1.03 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 3.59 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.69 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.50 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.44 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.69 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 1.46 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 2.54 | MC |
| SRR5856929 | leaf | control | 0.34 | MC |
| SRR5856933 | leaf | control | 0.44 | MC |
| SRR5856934 | leaf | control | 0.23 | MC |
| SRR6168973 | leaf | none (control) | 0.50 | MC |
| SRR6168974 | leaf | none (control) | 2.84 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 1.01 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 1.13 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.23 | MC |
| SRR4947496 | root | control | 1.13 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.26 | MC |
| SRR5126147 | root | "mock,1_day" | 2.01 | MC |
| SRR5126148 | root | "mock,1_day" | 1.79 | MC |
| SRR5126149 | root | "mock,1_day" | 1.11 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 1.22 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.50 | MC |
| SRR5126153 | root | "mock,7_days" | 3.20 | MC |
| SRR5126155 | root | "mock,7_days" | 1.75 | MC |
| SRR5126157 | root | "mock,7_days" | 0.63 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 2.93 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 1.32 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 1.45 | MC |
| SRR5126165 | root | "mock,14_days" | 1.73 | MC |
| SRR5126167 | root | "mock,14_days" | 0.67 | MC |
| SRR5126169 | root | "mock,14_days" | 1.35 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 1.54 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 2.62 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 1.08 | MC |
| SRR4947480 | root | control | 0.72 | MC |
| SRR4947500 | root | Al | 2.58 | MC |
| SRR4947504 | root | control | 2.25 | MC |
| SRR1740432 | root_elongation_zone | wt | 1.30 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.27 | MC |
| SRR1740429 | root_meristematic_zone | wt | 1.45 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.94 | MC |
| SRR6441555 | seedling | wild_type | 0.24 | MC |
| SRR2154086 | seedling | wt | 0.69 | MC |
| SRR2154082 | seedling | wt | 0.35 | MC |
| SRR2154083 | seedling | wt | 1.25 | MC |
| SRR2154084 | seedling | wt | 0.31 | MC |
| SRR2154087 | seedling | wt | 0.84 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.71 | MC |
| SRR2857720 | seedling | drought_stress_1h | 0.39 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 6.31 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.47 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.98 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.65 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.64 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.75 | MC |