| SRR5560727 | caryopsis | wild_type | 0.67 | MC |
| SRR5560729 | caryopsis | wild_type | 0.57 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 3.45 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 2.98 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.38 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.64 | MC |
| SRR7265400 | coleoptile | 2dA | 0.81 | MC |
| SRR7265401 | coleoptile | 2dA | 0.86 | MC |
| SRR7265402 | coleoptile | 2dA | 0.65 | MC |
| SRR7265406 | coleoptile | 3dA | 1.89 | MC |
| SRR7265407 | coleoptile | 3dA | 1.06 | MC |
| SRR7265408 | coleoptile | 3dA | 1.76 | MC |
| SRR7265417 | coleoptile | 4dN | 0.53 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 0.89 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 0.97 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 2.97 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 3.73 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.79 | MC |
| SRR7265374 | embryo | dry seed 0 h | 0.44 | MC |
| SRR7265378 | embryo | 1hA | 0.27 | MC |
| SRR7265379 | embryo | 1hN | 0.52 | MC |
| SRR7265384 | embryo | 3hA | 0.38 | MC |
| SRR7265387 | embryo | 3hN | 0.29 | MC |
| SRR7265390 | embryo | 12hA | 0.43 | MC |
| SRR7265396 | embryo | 24hA | 1.03 | MC |
| SRR2338868 | endosprem | high_temperature | 0.78 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.94 | MC |
| SRR1213691 | flower | wt | 1.09 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 2.44 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 3.52 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 3.09 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.53 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.26 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.32 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 1.89 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.98 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 1.32 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 2.65 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 2.14 | MC |
| SRR6168973 | leaf | none (control) | 1.04 | MC |
| SRR6168975 | leaf | none (control) | 0.44 | MC |
| SRR8582893 | panicle | PM | 0.49 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.79 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 1.23 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.72 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 1.05 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.56 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.97 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 1.03 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 0.89 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.83 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 2.71 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.84 | MC |
| SRR5126153 | root | "mock,7_days" | 0.73 | MC |
| SRR5126155 | root | "mock,7_days" | 0.65 | MC |
| SRR5126157 | root | "mock,7_days" | 0.45 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.87 | MC |
| SRR5126165 | root | "mock,14_days" | 1.20 | MC |
| SRR5126167 | root | "mock,14_days" | 1.66 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.34 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.74 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.78 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 1.47 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.46 | MC |
| SRR1213694 | root | wt | 1.26 | MC |
| SRR4947500 | root | Al | 5.15 | MC |
| SRR4947501 | root | Al | 5.58 | MC |
| SRR4947509 | root | Al | 4.56 | MC |
| SRR6502091 | root | 100 mM NaCl | 1.11 | MC |
| SRR6502093 | root | 100 mM NaCl | 0.68 | MC |
| SRR6502095 | root | control | 3.13 | MC |
| SRR6502103 | root | 100 mM NaCl | 1.96 | MC |
| SRR6502104 | root | 100 mM NaCl | 1.70 | MC |
| SRR6502105 | root | 100 mM NaCl | 2.15 | MC |
| SRR6502108 | root | control | 3.78 | MC |
| SRR1740434 | root_differentiation_zone | wt | 0.53 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.60 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.55 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.34 | MC |
| SRR2154086 | seedling | wt | 2.57 | MC |
| SRR2154085 | seedling | wt | 4.33 | MC |
| SRR2154087 | seedling | wt | 0.92 | MC |
| SRR3098741 | seedling | wt | 2.30 | MC |
| SRR3098742 | seedling | wt | 0.47 | MC |
| SRR3098743 | seedling | wt | 1.14 | MC |
| SRR2857720 | seedling | drought_stress_1h | 1.74 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 2.51 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 9.52 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.31 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 4.12 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.30 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.24 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.23 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.44 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.55 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.70 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.79 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.49 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.38 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.49 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.64 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 0.63 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 0.98 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 3.96 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 1.09 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 1.51 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 0.77 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 1.60 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 0.71 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 0.99 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 0.88 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 1.68 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 1.10 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 1.37 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 0.94 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 1.43 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 2.41 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 1.17 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 1.93 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 1.89 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 1.64 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 3.64 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 1.97 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 2.77 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 2.11 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 1.61 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.92 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.36 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.40 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 1.29 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 1.11 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 2.41 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 1.18 | MC |