| SRR4457249 | 2nd_leaf | DAH4 | 1.66 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 1.80 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 1.88 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.98 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 0.63 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.88 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 0.92 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 1.13 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 0.72 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.53 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 0.47 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 1.01 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 1.31 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 0.81 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 0.86 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 1.19 | MC |
| SRR5560728 | caryopsis | wild_type | 0.68 | MC |
| SRR7265407 | coleoptile | 3dA | 0.28 | MC |
| SRR7265413 | coleoptile | 4dA | 0.63 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.89 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 0.80 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 1.06 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 1.31 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 1.03 | MC |
| SRR4457231 | flag_leaf | DAH4 | 1.14 | MC |
| SRR4457232 | flag_leaf | DAH4 | 1.13 | MC |
| SRR4457233 | flag_leaf | DAH4 | 1.23 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.50 | MC |
| SRR4457235 | flag_leaf | DAH12 | 0.52 | MC |
| SRR4457236 | flag_leaf | DAH12 | 0.50 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.42 | MC |
| SRR4457243 | flag_leaf | DAH36 | 0.69 | MC |
| SRR4457244 | flag_leaf | DAH36 | 0.30 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.40 | MC |
| SRR4457246 | flag_leaf | DAH44 | 0.45 | MC |
| SRR1213690 | flower | wt(flower buds) | 1.00 | MC |
| SRR8060835 | leaf | wild_type | 1.10 | MC |
| SRR8060836 | leaf | wild_type | 1.01 | MC |
| SRR8060837 | leaf | wild_type | 0.93 | MC |
| SRR8240824 | leaf | wild_type | 0.47 | MC |
| SRR8240825 | leaf | wild_type | 0.47 | MC |
| SRR8240826 | leaf | wild_type | 0.35 | MC |
| SRR8240820 | leaf | wild_type | 0.20 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.10 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.65 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.88 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.73 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.99 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.85 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.69 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.77 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.99 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.58 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.96 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.82 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.91 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 1.18 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.58 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.89 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.03 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.83 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.64 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.39 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.24 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.74 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.24 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.71 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.57 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.85 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.78 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.58 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.74 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 0.82 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.76 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 0.76 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 1.26 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 0.76 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 1.26 | MC |
| SRR1761530 | leaf | control | 0.75 | MC |
| SRR1761531 | leaf | control | 1.26 | MC |
| SRR504365 | leaf | wt | 2.21 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.81 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.48 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.59 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.55 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.52 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.73 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.33 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.42 | MC |
| SRR1213692 | leaf | wt | 0.52 | MC |
| SRR1213693 | leaf | wt | 0.41 | MC |
| SRR6502088 | leaf | control | 0.46 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 0.47 | MC |
| SRR6502100 | leaf | control | 0.37 | MC |
| SRR6502101 | leaf | control | 0.65 | MC |
| SRR6502102 | leaf | control | 0.71 | MC |
| SRR5856928 | leaf | control | 2.32 | MC |
| SRR5856929 | leaf | control | 1.87 | MC |
| SRR5856930 | leaf | salt | 1.27 | MC |
| SRR5856931 | leaf | salt | 1.40 | MC |
| SRR5856932 | leaf | salt | 1.05 | MC |
| SRR5856936 | leaf | salt | 1.79 | MC |
| SRR5856937 | leaf | salt | 1.67 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 6.29 | MC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 4.39 | MC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 4.70 | MC |
| SRR6053395 | leaf | gibberellic acid (GA) | 2.74 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 3.18 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 2.82 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 5.21 | MC |
| SRR6168973 | leaf | none (control) | 0.39 | MC |
| SRR6168975 | leaf | none (control) | 0.48 | MC |
| SRR8582888 | panicle | AM | 1.36 | MC |
| SRR8582889 | panicle | AM | 0.87 | MC |
| SRR8582890 | panicle | AM | 1.09 | MC |
| SRR8582891 | panicle | PM | 2.91 | MC |
| SRR8582892 | panicle | PM | 4.14 | MC |
| SRR8582893 | panicle | PM | 3.03 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 4.60 | MC |
| SRR5110449 | panicle | Dawn + 14h | 5.78 | MC |
| SRR5126147 | root | "mock,1_day" | 3.78 | MC |
| SRR5126149 | root | "mock,1_day" | 3.25 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 1.00 | MC |
| SRR5126153 | root | "mock,7_days" | 2.36 | MC |
| SRR5126155 | root | "mock,7_days" | 2.65 | MC |
| SRR5126157 | root | "mock,7_days" | 1.34 | MC |
| SRR5126165 | root | "mock,14_days" | 1.26 | MC |
| SRR5126167 | root | "mock,14_days" | 0.60 | MC |
| SRR5126169 | root | "mock,14_days" | 1.05 | MC |
| SRR1213695 | root | wt | 0.36 | MC |
| SRR4947489 | root | control | 0.52 | MC |
| SRR6502108 | root | control | 0.86 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.27 | MC |
| SRR1740431 | root_elongation_zone | wt | 2.16 | MC |
| SRR1740433 | root_elongation_zone | wt | 2.95 | MC |
| SRR1740428 | root_meristematic_zone | wt | 2.98 | MC |
| SRR1740430 | root_meristematic_zone | wt | 2.74 | MC |
| SRR6441554 | seedling | wild_type | 0.51 | MC |
| SRR6441555 | seedling | wild_type | 0.62 | MC |
| SRR2154086 | seedling | wt | 0.46 | MC |
| SRR2154083 | seedling | wt | 3.49 | MC |
| SRR2154084 | seedling | wt | 0.93 | MC |
| SRR2154085 | seedling | wt | 1.66 | MC |
| SRR2154087 | seedling | wt | 0.73 | MC |
| SRR3098741 | seedling | wt | 0.48 | MC |
| SRR3098742 | seedling | wt | 0.91 | MC |
| SRR3098743 | seedling | wt | 1.14 | MC |
| SRR2857719 | seedling | drought_stress_0h | 1.38 | MC |
| SRR2857720 | seedling | drought_stress_1h | 1.50 | MC |
| SRR1944583 | seedling | no_treatment | 0.63 | MC |
| SRR358791 | seedling | wt | 1.05 | MC |
| SRR358792 | seedling | wt | 0.88 | MC |
| SRR358793 | seedling | wt | 0.70 | MC |
| SRR358794 | seedling | wt | 0.74 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.92 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 4.44 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 7.86 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 8.21 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 8.66 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.22 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.21 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.36 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 0.43 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 0.55 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 0.32 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 0.47 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.31 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.45 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.00 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.66 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.56 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.21 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.67 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.35 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.44 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.40 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.35 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.41 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.47 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.57 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 0.52 | MC |