| SRR4457256 | 2nd_leaf | DAH20 | 4.14 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 3.68 | MC |
| SRR7265400 | coleoptile | 2dA | 2.37 | MC |
| SRR7265401 | coleoptile | 2dA | 2.25 | MC |
| SRR7265403 | coleoptile | 2dN | 3.28 | MC |
| SRR7265404 | coleoptile | 2dN | 3.16 | MC |
| SRR7265405 | coleoptile | 2dN | 2.62 | MC |
| SRR7265406 | coleoptile | 3dA | 2.46 | MC |
| SRR7265407 | coleoptile | 3dA | 2.66 | MC |
| SRR7265408 | coleoptile | 3dA | 1.46 | MC |
| SRR7265409 | coleoptile | 3dN | 3.53 | MC |
| SRR7265410 | coleoptile | 3dN | 3.01 | MC |
| SRR7265412 | coleoptile | 4dA | 2.26 | MC |
| SRR7265413 | coleoptile | 4dA | 2.33 | MC |
| SRR7265414 | coleoptile | 4dA | 2.58 | MC |
| SRR7265415 | coleoptile | 4dN | 3.55 | MC |
| SRR7265416 | coleoptile | 4dN | 2.51 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 3.97 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 2.75 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 2.02 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.93 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 1.13 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 1.32 | MC |
| SRR7265382 | embryo | 3hA | 2.40 | MC |
| SRR7265383 | embryo | 3hA | 3.75 | MC |
| SRR7265384 | embryo | 3hA | 3.06 | MC |
| SRR7265388 | embryo | 12hA | 4.00 | MC |
| SRR7265389 | embryo | 12hA | 4.73 | MC |
| SRR7265392 | embryo | 12hN | 3.42 | MC |
| SRR7265393 | embryo | 12hN | 3.93 | MC |
| SRR7265394 | embryo | 24hA | 3.07 | MC |
| SRR7265395 | embryo | 24hA | 3.42 | MC |
| SRR7265396 | embryo | 24hA | 3.52 | MC |
| SRR7265397 | embryo | 24hN | 5.05 | MC |
| SRR7265398 | embryo | 24hN | 2.87 | MC |
| SRR7265399 | embryo | 24hN | 3.28 | MC |
| SRR2338866 | endosprem | control | 2.85 | MC |
| SRR2338869 | endosprem | high_temperature | 1.06 | MC |
| SRR4457234 | flag_leaf | DAH12 | 1.99 | MC |
| SRR4457235 | flag_leaf | DAH12 | 2.09 | MC |
| SRR4457236 | flag_leaf | DAH12 | 1.24 | MC |
| SRR4457237 | flag_leaf | DAH20 | 2.46 | MC |
| SRR4457238 | flag_leaf | DAH20 | 1.55 | MC |
| SRR4457239 | flag_leaf | DAH20 | 2.41 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 5.92 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 3.39 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 4.10 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 3.11 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 5.36 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 2.51 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 3.72 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 5.19 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 3.36 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 3.08 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 4.95 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 5.41 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 1.80 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 4.77 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 4.82 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 3.36 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 5.68 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 3.34 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 4.24 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 4.89 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 3.37 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 2.69 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 4.89 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 3.37 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 2.69 | MC |
| SRR1761528 | leaf | drought | 4.89 | MC |
| SRR1761529 | leaf | drought | 3.37 | MC |
| SRR1761531 | leaf | control | 2.69 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.82 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.04 | MC |
| SRR6417967 | leaf | H2O_control | 3.75 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 1.52 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 3.30 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 3.46 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 2.44 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 3.13 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 3.66 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.79 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 2.73 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 3.34 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 3.03 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 1.31 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 2.79 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 1.54 | MC |
| SRR6502089 | leaf | control | 1.95 | MC |
| SRR6502090 | leaf | control | 2.59 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 3.57 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 2.01 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 4.18 | MC |
| SRR6502100 | leaf | control | 3.50 | MC |
| SRR6502101 | leaf | control | 2.96 | MC |
| SRR5856932 | leaf | salt | 0.26 | MC |
| SRR5856938 | leaf | salt | 0.22 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 0.49 | MC |
| SRR6168979 | leaf | none (control) | 1.20 | MC |
| SRR6168980 | leaf | none (control) | 1.15 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.37 | MC |
| SRR8582888 | panicle | AM | 1.85 | MC |
| SRR8582889 | panicle | AM | 1.12 | MC |
| SRR8582890 | panicle | AM | 1.38 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.87 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.49 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 3.44 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 3.53 | MC |
| SRR5126147 | root | "mock,1_day" | 0.95 | MC |
| SRR5126148 | root | "mock,1_day" | 0.65 | MC |
| SRR5126149 | root | "mock,1_day" | 1.18 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 1.57 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 1.39 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.91 | MC |
| SRR5126153 | root | "mock,7_days" | 1.07 | MC |
| SRR5126155 | root | "mock,7_days" | 1.60 | MC |
| SRR5126157 | root | "mock,7_days" | 3.35 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 2.24 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 2.48 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 2.00 | MC |
| SRR5126165 | root | "mock,14_days" | 0.83 | MC |
| SRR5126167 | root | "mock,14_days" | 1.33 | MC |
| SRR5126169 | root | "mock,14_days" | 2.29 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 3.19 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 2.31 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.51 | MC |
| SRR1213694 | root | wt | 0.82 | MC |
| SRR4947484 | root | Al | 0.76 | MC |
| SRR4947497 | root | control | 2.86 | MC |
| SRR4947501 | root | Al | 0.52 | MC |
| SRR4947505 | root | control | 1.96 | MC |
| SRR6502103 | root | 100 mM NaCl | 0.41 | MC |
| SRR1740434 | root_differentiation_zone | wt | 2.54 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.53 | MC |
| SRR1740436 | root_differentiation_zone | wt | 1.36 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.65 | MC |
| SRR2154083 | seedling | wt | 3.50 | MC |
| SRR2857719 | seedling | drought_stress_0h | 2.52 | MC |
| SRR2857720 | seedling | drought_stress_1h | 2.10 | MC |
| SRR2857721 | seedling | drought_stress_6h | 1.20 | MC |
| SRR1944583 | seedling | no_treatment | 4.33 | MC |
| SRR358791 | seedling | wt | 4.44 | MC |
| SRR358792 | seedling | wt | 7.35 | MC |
| SRR358793 | seedling | wt | 4.53 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 2.98 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.82 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 5.62 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 5.42 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 9.32 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.41 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.70 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.94 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.59 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 1.34 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 2.57 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 2.54 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 1.45 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 2.14 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 2.71 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 3.35 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 3.16 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 2.95 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 3.05 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 4.38 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 2.08 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 3.28 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 3.37 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 6.78 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 8.50 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 4.72 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 7.40 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 3.90 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 5.60 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 5.37 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 4.76 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 5.98 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 4.89 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 6.89 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 4.87 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 5.30 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 5.29 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 7.90 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 5.78 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 6.69 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 8.72 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 2.35 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 3.84 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 5.49 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 5.89 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 2.56 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 3.55 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 4.01 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.26 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.27 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.16 | MC |