| SRR4457249 | 2nd_leaf | DAH4 | 0.95 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 0.26 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.48 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 0.37 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.56 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 1.01 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 1.12 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 0.59 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 1.18 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.51 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 0.71 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 0.84 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 1.33 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 1.18 | MC |
| SRR5560727 | caryopsis | wild_type | 3.89 | MC |
| SRR5560728 | caryopsis | wild_type | 1.51 | MC |
| SRR5560729 | caryopsis | wild_type | 1.87 | MC |
| SRR4947495 | root | control | 4.46 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.56 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 1.15 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 1.25 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 0.73 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 0.95 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 1.13 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 0.41 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 1.30 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 0.47 | MC |
| SRR7265386 | embryo | 3hN | 0.34 | MC |
| SRR2338866 | endosprem | control | 1.44 | MC |
| SRR2338867 | endosprem | control | 0.61 | MC |
| SRR2338868 | endosprem | high_temperature | 1.14 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.56 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.63 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.42 | MC |
| SRR4457235 | flag_leaf | DAH12 | 0.70 | MC |
| SRR4457236 | flag_leaf | DAH12 | 0.59 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.73 | MC |
| SRR4457238 | flag_leaf | DAH20 | 0.91 | MC |
| SRR4457240 | flag_leaf | DAH28 | 0.80 | MC |
| SRR4457241 | flag_leaf | DAH28 | 1.70 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.92 | MC |
| SRR4457243 | flag_leaf | DAH36 | 1.22 | MC |
| SRR4457244 | flag_leaf | DAH36 | 0.80 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.69 | MC |
| SRR4457246 | flag_leaf | DAH44 | 1.02 | MC |
| SRR4457248 | flag_leaf | DAH44 | 0.78 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.30 | MC |
| SRR8060835 | leaf | wild_type | 0.90 | MC |
| SRR8060836 | leaf | wild_type | 1.26 | MC |
| SRR8060837 | leaf | wild_type | 0.85 | MC |
| SRR8240825 | leaf | wild_type | 0.23 | MC |
| SRR8240826 | leaf | wild_type | 0.22 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.21 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.60 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.58 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.17 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.06 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.82 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.55 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.75 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.21 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.95 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.91 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.31 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.32 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.88 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 0.57 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.41 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.19 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.70 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.63 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.77 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.91 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.79 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.27 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.10 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.94 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.48 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 0.70 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 1.18 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 1.18 | MC |
| SRR1761529 | leaf | drought | 1.18 | MC |
| SRR504365 | leaf | wt | 0.34 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.36 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.49 | MC |
| SRR6417967 | leaf | H2O_control | 0.52 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.23 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 2.17 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 1.32 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.65 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 0.91 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 1.50 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 1.16 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 1.90 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.51 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 0.53 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.55 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.37 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.45 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.55 | MC |
| SRR6502089 | leaf | control | 0.60 | MC |
| SRR6502090 | leaf | control | 0.54 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 0.42 | MC |
| SRR6502101 | leaf | control | 0.38 | MC |
| SRR6502102 | leaf | control | 0.50 | MC |
| SRR5856927 | leaf | control | 1.17 | MC |
| SRR5856928 | leaf | control | 1.65 | MC |
| SRR5856929 | leaf | control | 1.22 | MC |
| SRR5856931 | leaf | salt | 1.78 | MC |
| SRR5856933 | leaf | control | 0.93 | MC |
| SRR5856934 | leaf | control | 0.63 | MC |
| SRR5856935 | leaf | control | 1.82 | MC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 4.67 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 5.84 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 4.60 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 5.61 | MC |
| SRR6168973 | leaf | none (control) | 0.40 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 0.69 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 0.53 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.23 | MC |
| SRR8582889 | panicle | AM | 0.11 | MC |
| SRR5110429 | panicle | Dawn | 1.68 | MC |
| SRR5110430 | panicle | Dawn | 2.87 | MC |
| SRR5110431 | panicle | Dawn | 2.04 | MC |
| SRR5110432 | panicle | Dawn | 0.69 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 0.90 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 0.78 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 1.00 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 1.05 | MC |
| SRR5110437 | panicle | Dawn + 7h | 0.80 | MC |
| SRR5110438 | panicle | Dawn + 7h | 0.70 | MC |
| SRR5110439 | panicle | Dawn + 7h | 2.54 | MC |
| SRR5110440 | panicle | Dawn + 7h | 2.01 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 0.54 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 0.70 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 1.04 | MC |
| SRR5110445 | panicle | Dusk | 0.68 | MC |
| SRR5110446 | panicle | Dusk | 0.83 | MC |
| SRR5110447 | panicle | Dusk | 0.53 | MC |
| SRR5110448 | panicle | Dusk | 0.93 | MC |
| SRR5110449 | panicle | Dawn + 14h | 2.27 | MC |
| SRR5110450 | panicle | Dawn + 14h | 1.45 | MC |
| SRR5110451 | panicle | Dawn + 14h | 1.23 | MC |
| SRR5110452 | panicle | Dawn + 14h | 2.05 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 1.02 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 0.89 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 0.88 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 1.32 | MC |
| SRR5110457 | panicle | Dawn + 21h | 0.39 | MC |
| SRR5110458 | panicle | Dawn + 21h | 1.78 | MC |
| SRR5110459 | panicle | Dawn + 21h | 0.53 | MC |
| SRR5110460 | panicle | Dawn + 21h | 0.98 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.24 | MC |
| SRR5126147 | root | "mock,1_day" | 0.61 | MC |
| SRR5126148 | root | "mock,1_day" | 0.77 | MC |
| SRR5126149 | root | "mock,1_day" | 0.93 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.68 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.66 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.57 | MC |
| SRR5126153 | root | "mock,7_days" | 0.48 | MC |
| SRR5126157 | root | "mock,7_days" | 0.77 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.35 | MC |
| SRR5126167 | root | "mock,14_days" | 0.76 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.39 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.29 | MC |
| SRR1213695 | root | wt | 0.18 | MC |
| SRR4947478 | root | control | 2.40 | MC |
| SRR4947479 | root | control | 1.75 | MC |
| SRR4947482 | root | Al | 1.43 | MC |
| SRR4947483 | root | Al | 2.37 | MC |
| SRR4947487 | root | control | 2.32 | MC |
| SRR4947488 | root | control | 0.82 | MC |
| SRR4947490 | root | Al | 3.29 | MC |
| SRR4947491 | root | Al | 4.26 | MC |
| SRR4947494 | root | control | 3.34 | MC |
| SRR4947497 | root | control | 0.60 | MC |
| SRR4947498 | root | Al | 4.47 | MC |
| SRR4947499 | root | Al | 4.19 | MC |
| SRR4947502 | root | control | 3.83 | MC |
| SRR4947503 | root | control | 2.39 | MC |
| SRR6441555 | seedling | wild_type | 0.39 | MC |
| SRR2154082 | seedling | wt | 0.53 | MC |
| SRR2154083 | seedling | wt | 0.30 | MC |
| SRR2154084 | seedling | wt | 0.99 | MC |
| SRR3098741 | seedling | wt | 0.29 | MC |
| SRR3098742 | seedling | wt | 0.30 | MC |
| SRR3098743 | seedling | wt | 0.45 | MC |
| SRR2857720 | seedling | drought_stress_1h | 0.57 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.29 | MC |
| SRR358792 | seedling | wt | 1.09 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 5.95 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.00 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.94 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 0.50 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 1.31 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 1.28 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 0.64 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.44 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.25 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.31 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 0.97 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 0.65 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 0.47 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.74 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 0.45 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 0.65 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.68 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.50 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.27 | MC |