| SRR5560727 | caryopsis | wild_type | 0.80 | MC |
| SRR5560729 | caryopsis | wild_type | 0.48 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 2.30 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 1.01 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 3.06 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 1.70 | MC |
| SRR7265401 | coleoptile | 2dA | 0.45 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.50 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.60 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.53 | MC |
| SRR7265388 | embryo | 12hA | 0.86 | MC |
| SRR7265390 | embryo | 12hA | 0.65 | MC |
| SRR7265399 | embryo | 24hN | 0.41 | MC |
| SRR2338867 | endosprem | control | 0.56 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.55 | MC |
| SRR4457236 | flag_leaf | DAH12 | 0.69 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.75 | MC |
| SRR4457238 | flag_leaf | DAH20 | 0.72 | MC |
| SRR4457239 | flag_leaf | DAH20 | 0.63 | MC |
| SRR4457240 | flag_leaf | DAH28 | 0.79 | MC |
| SRR4457241 | flag_leaf | DAH28 | 1.72 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.84 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.31 | MC |
| SRR8060836 | leaf | wild_type | 0.27 | MC |
| SRR8240824 | leaf | wild_type | 0.35 | MC |
| SRR8240825 | leaf | wild_type | 0.31 | MC |
| SRR8240826 | leaf | wild_type | 0.82 | MC |
| SRR8240818 | leaf | wild_type | 0.58 | MC |
| SRR8240819 | leaf | wild_type | 0.26 | MC |
| SRR8240820 | leaf | wild_type | 0.68 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 1.25 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 1.31 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 1.23 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 1.38 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.59 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.56 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.42 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.64 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 0.85 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.91 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.34 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.60 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.71 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.96 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.41 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.59 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.41 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.87 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.51 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 1.05 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 2.20 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 3.87 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 0.83 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 2.20 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 3.87 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 0.83 | MC |
| SRR1761528 | leaf | drought | 2.20 | MC |
| SRR1761529 | leaf | drought | 3.87 | MC |
| SRR1761531 | leaf | control | 0.83 | MC |
| SRR504365 | leaf | wt | 0.48 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.07 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.67 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.52 | MC |
| SRR6417968 | leaf | H2O_control | 0.86 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 3.49 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 2.47 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.26 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 2.51 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.27 | MC |
| SRR8611900 | leaf | Non-inoculated | 1.66 | MC |
| SRR8611901 | leaf | Non-inoculated | 1.69 | MC |
| SRR8611902 | leaf | Non-inoculated | 1.33 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.33 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.25 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 1.48 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 1.78 | MC |
| SRR1213692 | leaf | wt | 0.89 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 1.16 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 1.02 | MC |
| SRR6502088 | leaf | control | 1.05 | MC |
| SRR6502089 | leaf | control | 1.78 | MC |
| SRR6502090 | leaf | control | 1.66 | MC |
| SRR6502100 | leaf | control | 0.47 | MC |
| SRR6502101 | leaf | control | 1.68 | MC |
| SRR5856930 | leaf | salt | 1.73 | MC |
| SRR5856931 | leaf | salt | 1.05 | MC |
| SRR5856932 | leaf | salt | 0.53 | MC |
| SRR5856936 | leaf | salt | 1.11 | MC |
| SRR5856937 | leaf | salt | 1.35 | MC |
| SRR5856938 | leaf | salt | 1.39 | MC |
| SRR6168973 | leaf | none (control) | 3.74 | MC |
| SRR6168974 | leaf | none (control) | 4.20 | MC |
| SRR6168975 | leaf | none (control) | 3.03 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 3.60 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 1.56 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 4.09 | MC |
| SRR6168980 | leaf | none (control) | 0.45 | MC |
| SRR6168981 | leaf | none (control) | 0.45 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 1.79 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.55 | MC |
| SRR8582888 | panicle | AM | 1.18 | MC |
| SRR8582889 | panicle | AM | 1.34 | MC |
| SRR8582890 | panicle | AM | 0.66 | MC |
| SRR8582892 | panicle | PM | 1.04 | MC |
| SRR8582893 | panicle | PM | 0.75 | MC |
| SRR5110447 | panicle | Dusk | 0.49 | MC |
| SRR5110448 | panicle | Dusk | 0.56 | MC |
| SRR5110452 | panicle | Dawn + 14h | 0.57 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.16 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.31 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 0.47 | MC |
| SRR5126147 | root | "mock,1_day" | 0.40 | MC |
| SRR5126148 | root | "mock,1_day" | 0.42 | MC |
| SRR5126149 | root | "mock,1_day" | 0.45 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.42 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.43 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.59 | MC |
| SRR5126167 | root | "mock,14_days" | 0.42 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.68 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.55 | MC |
| SRR1213695 | root | wt | 0.28 | MC |
| SRR4947497 | root | control | 0.89 | MC |
| SRR4947507 | root | Al | 0.59 | MC |
| SRR6502092 | root | 100 mM NaCl | 0.40 | MC |
| SRR1740436 | root_differentiation_zone | wt | 1.02 | MC |
| SRR1740431 | root_elongation_zone | wt | 1.15 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.29 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.36 | MC |
| SRR1740428 | root_meristematic_zone | wt | 0.94 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.76 | MC |
| SRR1740430 | root_meristematic_zone | wt | 1.46 | MC |
| SRR6441554 | seedling | wild_type | 1.94 | MC |
| SRR6441555 | seedling | wild_type | 2.11 | MC |
| SRR2154086 | seedling | wt | 3.10 | MC |
| SRR2154082 | seedling | wt | 1.11 | MC |
| SRR2154083 | seedling | wt | 1.25 | MC |
| SRR2154084 | seedling | wt | 1.75 | MC |
| SRR2154087 | seedling | wt | 2.43 | MC |
| SRR3098741 | seedling | wt | 0.33 | MC |
| SRR3098742 | seedling | wt | 0.79 | MC |
| SRR3098743 | seedling | wt | 0.43 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.75 | MC |
| SRR2857720 | seedling | drought_stress_1h | 0.45 | MC |
| SRR358793 | seedling | wt | 0.92 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.10 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 3.67 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 6.01 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 10.23 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.75 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 4.47 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 4.59 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.65 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 1.59 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 1.16 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.76 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 1.80 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 2.17 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 1.01 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 2.77 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 2.38 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 1.96 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 1.27 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 1.79 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 2.41 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 1.66 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 1.60 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.65 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.26 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.43 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.35 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.02 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.63 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.37 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.84 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.73 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.31 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.93 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.95 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.08 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.73 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.47 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.51 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.47 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.35 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.64 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.63 | MC |