| SRR6320473 | carpel | wt | 1.15 | MC |
| SRR5560728 | caryopsis | wild_type | 0.52 | MC |
| SRR5560729 | caryopsis | wild_type | 1.06 | MC |
| SRR4947495 | root | control | 2.69 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.66 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 1.05 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.63 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 0.38 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 1.87 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.85 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 0.50 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 0.82 | MC |
| SRR1213691 | flower | wt | 0.63 | MC |
| SRR8060835 | leaf | wild_type | 0.44 | MC |
| SRR8060836 | leaf | wild_type | 0.41 | MC |
| SRR8060837 | leaf | wild_type | 0.38 | MC |
| SRR8240824 | leaf | wild_type | 0.59 | MC |
| SRR8240825 | leaf | wild_type | 0.36 | MC |
| SRR8240826 | leaf | wild_type | 0.33 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.34 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.58 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 1.19 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 0.56 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.69 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.75 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.97 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.06 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.27 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.10 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.96 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.23 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 2.15 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.45 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.52 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.74 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.88 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 3.01 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.42 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.02 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.62 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.42 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 1.73 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 1.25 | MC |
| SRR504365 | leaf | wt | 1.33 | MC |
| SRR6417967 | leaf | H2O_control | 0.74 | MC |
| SRR6417968 | leaf | H2O_control | 0.43 | MC |
| SRR6417969 | leaf | H2O_control | 1.61 | MC |
| SRR8611900 | leaf | Non-inoculated | 1.02 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.61 | MC |
| SRR8611902 | leaf | Non-inoculated | 1.05 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.60 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.69 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 1.51 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 1.45 | MC |
| SRR1213692 | leaf | wt | 1.09 | MC |
| SRR1213693 | leaf | wt | 0.82 | MC |
| SRR5856928 | leaf | control | 1.96 | MC |
| SRR5856929 | leaf | control | 0.96 | MC |
| SRR5856930 | leaf | salt | 1.10 | MC |
| SRR5856931 | leaf | salt | 0.80 | MC |
| SRR5856932 | leaf | salt | 0.56 | MC |
| SRR5856934 | leaf | control | 1.26 | MC |
| SRR5856935 | leaf | control | 2.30 | MC |
| SRR5856936 | leaf | salt | 1.39 | MC |
| SRR5856937 | leaf | salt | 0.36 | MC |
| SRR5856938 | leaf | salt | 0.92 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 2.80 | MC |
| SRR6168973 | leaf | none (control) | 0.55 | MC |
| SRR6168980 | leaf | none (control) | 0.39 | MC |
| SRR6168981 | leaf | none (control) | 0.78 | MC |
| SRR8582892 | panicle | PM | 1.51 | MC |
| SRR8582893 | panicle | PM | 0.95 | MC |
| SRR5110432 | panicle | Dawn | 2.17 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 0.53 | MC |
| SRR5110438 | panicle | Dawn + 7h | 1.01 | MC |
| SRR5110439 | panicle | Dawn + 7h | 1.30 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 0.69 | MC |
| SRR5110448 | panicle | Dusk | 1.59 | MC |
| SRR5110450 | panicle | Dawn + 14h | 0.76 | MC |
| SRR5110451 | panicle | Dawn + 14h | 1.44 | MC |
| SRR5110452 | panicle | Dawn + 14h | 1.92 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.89 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 1.39 | MC |
| SRR5110457 | panicle | Dawn + 21h | 1.33 | MC |
| SRR5110458 | panicle | Dawn + 21h | 0.54 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.35 | MC |
| SRR5126147 | root | "mock,1_day" | 1.77 | MC |
| SRR5126148 | root | "mock,1_day" | 1.60 | MC |
| SRR5126149 | root | "mock,1_day" | 3.48 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 4.32 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 3.79 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 3.10 | MC |
| SRR5126153 | root | "mock,7_days" | 1.83 | MC |
| SRR5126155 | root | "mock,7_days" | 2.19 | MC |
| SRR5126157 | root | "mock,7_days" | 3.34 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 2.99 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 4.99 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 2.15 | MC |
| SRR5126167 | root | "mock,14_days" | 2.02 | MC |
| SRR5126169 | root | "mock,14_days" | 1.64 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 4.19 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 4.13 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 2.39 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 1.79 | MC |
| SRR1213694 | root | wt | 0.85 | MC |
| SRR1213695 | root | wt | 2.03 | MC |
| SRR4947478 | root | control | 3.29 | MC |
| SRR4947479 | root | control | 1.54 | MC |
| SRR4947482 | root | Al | 1.66 | MC |
| SRR4947483 | root | Al | 3.04 | MC |
| SRR4947503 | root | control | 1.08 | MC |
| SRR4947507 | root | Al | 1.77 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.30 | MC |
| SRR6441554 | seedling | wild_type | 1.43 | MC |
| SRR2154086 | seedling | wt | 1.35 | MC |
| SRR3098741 | seedling | wt | 1.96 | MC |
| SRR3098742 | seedling | wt | 0.52 | MC |
| SRR3098743 | seedling | wt | 1.10 | MC |
| SRR2857720 | seedling | drought_stress_1h | 2.44 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 1.94 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.13 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.76 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.05 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.77 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.60 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.30 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.02 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.50 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.88 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.66 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.69 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.89 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.50 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.23 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.24 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.56 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.42 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 3.36 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 0.97 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 2.39 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 1.91 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 1.80 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.80 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.44 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.21 | MC |