| SRR4457250 | 2nd_leaf | DAH4 | 0.88 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 0.86 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.53 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 0.73 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.59 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 0.68 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.68 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 1.07 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 1.76 | MC |
| SRR358798 | callus | wt | 3.17 | MC |
| SRR5560727 | caryopsis | wild_type | 0.85 | MC |
| SRR5560728 | caryopsis | wild_type | 1.57 | MC |
| SRR5560729 | caryopsis | wild_type | 0.94 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 0.74 | MC |
| SRR7265400 | coleoptile | 2dA | 0.41 | MC |
| SRR7265403 | coleoptile | 2dN | 0.80 | MC |
| SRR7265404 | coleoptile | 2dN | 1.24 | MC |
| SRR7265405 | coleoptile | 2dN | 1.13 | MC |
| SRR7265407 | coleoptile | 3dA | 0.28 | MC |
| SRR7265409 | coleoptile | 3dN | 1.36 | MC |
| SRR7265410 | coleoptile | 3dN | 1.91 | MC |
| SRR7265411 | coleoptile | 3dN | 1.87 | MC |
| SRR7265415 | coleoptile | 4dN | 2.30 | MC |
| SRR7265416 | coleoptile | 4dN | 2.38 | MC |
| SRR7265417 | coleoptile | 4dN | 1.10 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 1.39 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 1.03 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 0.89 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.72 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 0.59 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.42 | MC |
| SRR7265378 | embryo | 1hA | 0.29 | MC |
| SRR7265379 | embryo | 1hN | 0.28 | MC |
| SRR7265382 | embryo | 3hA | 0.87 | MC |
| SRR7265384 | embryo | 3hA | 0.45 | MC |
| SRR7265392 | embryo | 12hN | 0.58 | MC |
| SRR7265396 | embryo | 24hA | 0.95 | MC |
| SRR7265397 | embryo | 24hN | 0.76 | MC |
| SRR7265398 | embryo | 24hN | 0.76 | MC |
| SRR7265399 | embryo | 24hN | 1.35 | MC |
| SRR2338866 | endosprem | control | 1.71 | MC |
| SRR2338868 | endosprem | high_temperature | 0.51 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.63 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.32 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.77 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.42 | MC |
| SRR4457235 | flag_leaf | DAH12 | 0.48 | MC |
| SRR4457244 | flag_leaf | DAH36 | 0.81 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.82 | MC |
| SRR4457247 | flag_leaf | DAH44 | 1.24 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.64 | MC |
| SRR1213691 | flower | wt | 0.94 | MC |
| SRR8240824 | leaf | wild_type | 0.47 | MC |
| SRR8240826 | leaf | wild_type | 0.21 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.34 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.38 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 0.89 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.67 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.53 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.32 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.67 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.29 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.51 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.66 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.68 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.64 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.01 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.90 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.88 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.49 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.67 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 1.15 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 1.15 | MC |
| SRR1761531 | leaf | control | 1.15 | MC |
| SRR504365 | leaf | wt | 0.62 | MC |
| SRR6417969 | leaf | H2O_control | 0.50 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 0.39 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 0.33 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.32 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 0.27 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 0.29 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.87 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.74 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.47 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.22 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.99 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.37 | MC |
| SRR1213693 | leaf | wt | 0.37 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 0.61 | MC |
| SRR6502088 | leaf | control | 0.46 | MC |
| SRR6502100 | leaf | control | 0.60 | MC |
| SRR5856935 | leaf | control | 0.31 | MC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 2.20 | MC |
| SRR6168975 | leaf | none (control) | 0.43 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 0.40 | MC |
| SRR6168979 | leaf | none (control) | 0.31 | MC |
| SRR8582889 | panicle | AM | 0.73 | MC |
| SRR5110445 | panicle | Dusk | 0.48 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.26 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 3.83 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.85 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.73 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.58 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.27 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 2.57 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.76 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 0.49 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 0.79 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 3.67 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.49 | MC |
| SRR5126155 | root | "mock,7_days" | 0.80 | MC |
| SRR5126157 | root | "mock,7_days" | 0.54 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 1.11 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.87 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.78 | MC |
| SRR5126167 | root | "mock,14_days" | 0.37 | MC |
| SRR5126169 | root | "mock,14_days" | 0.49 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 1.22 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 3.43 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 2.33 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.29 | MC |
| SRR1213694 | root | wt | 0.59 | MC |
| SRR1213695 | root | wt | 0.40 | MC |
| SRR4947481 | root | control | 1.13 | MC |
| SRR4947484 | root | Al | 0.95 | MC |
| SRR4947504 | root | control | 0.77 | MC |
| SRR4947505 | root | control | 2.41 | MC |
| SRR6502092 | root | 100 mM NaCl | 1.07 | MC |
| SRR6502104 | root | 100 mM NaCl | 0.87 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.33 | MC |
| SRR6441555 | seedling | wild_type | 0.64 | MC |
| SRR2154086 | seedling | wt | 1.04 | MC |
| SRR2154082 | seedling | wt | 0.59 | MC |
| SRR2154083 | seedling | wt | 0.61 | MC |
| SRR2154084 | seedling | wt | 0.53 | MC |
| SRR2154085 | seedling | wt | 0.48 | MC |
| SRR3098741 | seedling | wt | 0.19 | MC |
| SRR3098743 | seedling | wt | 0.28 | MC |
| SRR1944583 | seedling | no_treatment | 0.42 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.20 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.28 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.29 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.50 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.53 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.63 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.37 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.45 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.41 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.10 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.38 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.71 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 0.95 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 0.78 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 0.54 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 2.38 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 0.94 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 1.42 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 1.67 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 1.95 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 0.73 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 3.42 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.28 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.38 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.51 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.17 | MC |