| SRR5560729 | caryopsis | wild_type | 1.84 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.81 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 0.80 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.57 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 1.52 | MC |
| SRR7265403 | coleoptile | 2dN | 0.51 | MC |
| SRR7265405 | coleoptile | 2dN | 0.45 | MC |
| SRR7265410 | coleoptile | 3dN | 0.72 | MC |
| SRR7265411 | coleoptile | 3dN | 0.86 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.43 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 1.21 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 1.17 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 1.13 | MC |
| SRR1213690 | flower | wt(flower buds) | 1.63 | MC |
| SRR1213691 | flower | wt | 3.83 | MC |
| SRR8060836 | leaf | wild_type | 0.30 | MC |
| SRR8240824 | leaf | wild_type | 0.25 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.94 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.70 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.21 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.32 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.22 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 2.55 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 2.47 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 2.27 | MC |
| SRR6502088 | leaf | control | 1.88 | MC |
| SRR6502089 | leaf | control | 0.87 | MC |
| SRR6502090 | leaf | control | 1.35 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 2.29 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 3.30 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 0.41 | MC |
| SRR6502100 | leaf | control | 1.23 | MC |
| SRR6502101 | leaf | control | 1.95 | MC |
| SRR6502102 | leaf | control | 1.89 | MC |
| SRR5856927 | leaf | control | 0.54 | MC |
| SRR5856928 | leaf | control | 0.50 | MC |
| SRR5856929 | leaf | control | 0.47 | MC |
| SRR5856931 | leaf | salt | 0.28 | MC |
| SRR5856932 | leaf | salt | 0.43 | MC |
| SRR5856934 | leaf | control | 0.84 | MC |
| SRR5856935 | leaf | control | 0.82 | MC |
| SRR5856936 | leaf | salt | 0.23 | MC |
| SRR6168973 | leaf | none (control) | 0.43 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 0.43 | MC |
| SRR5110429 | panicle | Dawn | 0.59 | MC |
| SRR5110432 | panicle | Dawn | 0.57 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 0.52 | MC |
| SRR5110437 | panicle | Dawn + 7h | 0.40 | MC |
| SRR5110438 | panicle | Dawn + 7h | 0.80 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 1.04 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 0.48 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 0.47 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 1.15 | MC |
| SRR5110448 | panicle | Dusk | 0.88 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.51 | MC |
| SRR5110452 | panicle | Dawn + 14h | 0.69 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.55 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 0.97 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 1.04 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 0.70 | MC |
| SRR5110457 | panicle | Dawn + 21h | 0.51 | MC |
| SRR5110458 | panicle | Dawn + 21h | 0.49 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.41 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.66 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 1.66 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 0.45 | MC |
| SRR5126147 | root | "mock,1_day" | 0.32 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.40 | MC |
| SRR5126155 | root | "mock,7_days" | 0.36 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.52 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.30 | MC |
| SRR4947493 | root | Al | 0.71 | MC |
| SRR4947501 | root | Al | 0.76 | MC |
| SRR4947505 | root | control | 0.92 | MC |
| SRR6502091 | root | 100 mM NaCl | 3.71 | MC |
| SRR6502093 | root | 100 mM NaCl | 4.91 | MC |
| SRR6502095 | root | control | 4.88 | MC |
| SRR6502103 | root | 100 mM NaCl | 3.74 | MC |
| SRR6502106 | root | control | 3.91 | MC |
| SRR6502107 | root | control | 3.93 | MC |
| SRR6502108 | root | control | 3.71 | MC |
| SRR6441555 | seedling | wild_type | 0.28 | MC |
| SRR2154082 | seedling | wt | 1.51 | MC |
| SRR2154083 | seedling | wt | 1.86 | MC |
| SRR2154084 | seedling | wt | 1.58 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.03 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 7.39 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 13.45 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.56 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.14 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.41 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.32 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.76 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 1.19 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 1.30 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 0.68 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 0.53 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 0.75 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 0.64 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 1.09 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 0.67 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 1.01 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 0.61 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 0.52 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 1.70 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 1.06 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 0.75 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 0.90 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 1.53 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 1.73 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 2.71 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 1.51 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 1.51 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 1.11 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 2.33 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 1.87 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 2.34 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 1.33 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 0.87 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 0.81 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.61 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 0.56 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.41 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.74 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.33 | MC |