| SRR3745125 | anther | wt | 0.94 | MC |
| SRR3745126 | anther | wt | 0.74 | MC |
| SRR3745127 | anther | wt | 1.39 | MC |
| SRR358795 | callus | wt | 3.58 | MC |
| SRR358796 | callus | wt | 4.43 | MC |
| SRR358797 | callus | wt | 2.60 | MC |
| SRR358798 | callus | wt | 4.87 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 1.17 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 1.95 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 2.46 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.65 | MC |
| SRR7265400 | coleoptile | 2dA | 0.45 | MC |
| SRR7265402 | coleoptile | 2dA | 0.35 | MC |
| SRR7265403 | coleoptile | 2dN | 0.59 | MC |
| SRR7265404 | coleoptile | 2dN | 0.69 | MC |
| SRR7265405 | coleoptile | 2dN | 0.78 | MC |
| SRR7265406 | coleoptile | 3dA | 0.44 | MC |
| SRR7265407 | coleoptile | 3dA | 0.40 | MC |
| SRR7265408 | coleoptile | 3dA | 0.38 | MC |
| SRR7265416 | coleoptile | 4dN | 0.61 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 0.67 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 0.61 | MC |
| SRR7265376 | embryo | 1hA | 0.40 | MC |
| SRR7265377 | embryo | 1hA | 0.43 | MC |
| SRR7265378 | embryo | 1hA | 0.50 | MC |
| SRR7265379 | embryo | 1hN | 0.34 | MC |
| SRR7265380 | embryo | 1hN | 0.51 | MC |
| SRR7265381 | embryo | 1hN | 0.39 | MC |
| SRR7265384 | embryo | 3hA | 0.42 | MC |
| SRR7265387 | embryo | 3hN | 0.52 | MC |
| SRR7265388 | embryo | 12hA | 0.98 | MC |
| SRR7265390 | embryo | 12hA | 0.57 | MC |
| SRR7265391 | embryo | 12hN | 0.91 | MC |
| SRR7265392 | embryo | 12hN | 1.01 | MC |
| SRR7265393 | embryo | 12hN | 1.09 | MC |
| SRR7265394 | embryo | 24hA | 0.62 | MC |
| SRR7265395 | embryo | 24hA | 0.47 | MC |
| SRR7265396 | embryo | 24hA | 0.60 | MC |
| SRR7265397 | embryo | 24hN | 0.87 | MC |
| SRR7265398 | embryo | 24hN | 0.80 | MC |
| SRR7265399 | embryo | 24hN | 0.92 | MC |
| SRR2338866 | endosprem | control | 2.95 | MC |
| SRR2338867 | endosprem | control | 0.64 | MC |
| SRR2338868 | endosprem | high_temperature | 1.82 | MC |
| SRR2338869 | endosprem | high_temperature | 3.02 | MC |
| SRR976168 | flag_leaf | wild_type | 0.76 | MC |
| SRR1213690 | flower | wt(flower buds) | 2.57 | MC |
| SRR8240825 | leaf | wild_type | 0.22 | MC |
| SRR8240818 | leaf | wild_type | 0.49 | MC |
| SRR8240820 | leaf | wild_type | 0.48 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 1.90 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 1.22 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 1.80 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 2.04 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.65 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.52 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.66 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.55 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.58 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.51 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 0.57 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.31 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.45 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.42 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.27 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.60 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.46 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.37 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.60 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 0.48 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 0.74 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 0.47 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 0.48 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 0.74 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 0.47 | MC |
| SRR1761528 | leaf | drought | 0.48 | MC |
| SRR1761529 | leaf | drought | 0.74 | MC |
| SRR1761530 | leaf | control | 0.47 | MC |
| SRR504365 | leaf | wt | 0.44 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.77 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 0.56 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 0.40 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 0.51 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.39 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 0.63 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 0.43 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.48 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.81 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.63 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.60 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 1.08 | MC |
| SRR8611900 | leaf | Non-inoculated | 1.69 | MC |
| SRR8611901 | leaf | Non-inoculated | 1.35 | MC |
| SRR8611902 | leaf | Non-inoculated | 2.24 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.92 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 1.00 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.87 | MC |
| SRR1213692 | leaf | wt | 0.73 | MC |
| SRR1213693 | leaf | wt | 0.83 | MC |
| SRR6168973 | leaf | none (control) | 3.97 | MC |
| SRR6168974 | leaf | none (control) | 2.99 | MC |
| SRR6168975 | leaf | none (control) | 1.86 | MC |
| SRR6168980 | leaf | none (control) | 0.28 | MC |
| SRR6168981 | leaf | none (control) | 1.22 | MC |
| SRR8582889 | panicle | AM | 0.19 | MC |
| SRR8582890 | panicle | AM | 0.24 | MC |
| SRR8582891 | panicle | PM | 0.48 | MC |
| SRR8582893 | panicle | PM | 0.60 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 1.10 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.67 | MC |
| SRR5126147 | root | "mock,1_day" | 2.18 | MC |
| SRR5126148 | root | "mock,1_day" | 2.66 | MC |
| SRR5126149 | root | "mock,1_day" | 1.28 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 1.26 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 1.33 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 1.30 | MC |
| SRR5126153 | root | "mock,7_days" | 1.20 | MC |
| SRR5126155 | root | "mock,7_days" | 1.71 | MC |
| SRR5126157 | root | "mock,7_days" | 2.11 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 1.08 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 1.74 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 2.33 | MC |
| SRR5126165 | root | "mock,14_days" | 0.51 | MC |
| SRR5126167 | root | "mock,14_days" | 1.57 | MC |
| SRR5126169 | root | "mock,14_days" | 1.29 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 2.09 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 1.96 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 2.82 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 2.73 | MC |
| SRR1213694 | root | wt | 1.16 | MC |
| SRR1213695 | root | wt | 0.89 | MC |
| SRR6441554 | seedling | wild_type | 1.64 | MC |
| SRR6441555 | seedling | wild_type | 0.73 | MC |
| SRR2154086 | seedling | wt | 1.76 | MC |
| SRR2154085 | seedling | wt | 0.62 | MC |
| SRR2154087 | seedling | wt | 2.00 | MC |
| SRR3098741 | seedling | wt | 0.47 | MC |
| SRR3098742 | seedling | wt | 0.84 | MC |
| SRR3098743 | seedling | wt | 0.78 | MC |
| SRR2857719 | seedling | drought_stress_0h | 2.12 | MC |
| SRR2857720 | seedling | drought_stress_1h | 0.64 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.25 | MC |
| SRR1944583 | seedling | no_treatment | 0.56 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 4.71 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.20 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.31 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.58 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.39 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.50 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.56 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.72 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 1.19 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 1.00 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 0.83 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 0.86 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 0.53 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 1.84 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.94 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.26 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.80 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.61 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.70 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.50 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.32 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.29 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.13 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.79 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.96 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.81 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.85 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.41 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.80 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.02 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.97 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.10 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.39 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 7.85 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 3.93 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 4.25 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 3.40 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 2.01 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 2.62 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 3.57 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 3.39 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 3.48 | MC |