| SRR358795 | callus | wt | 3.96 | MC |
| SRR358796 | callus | wt | 6.26 | MC |
| SRR358797 | callus | wt | 3.91 | MC |
| SRR358798 | callus | wt | 3.54 | MC |
| SRR5560727 | caryopsis | wild_type | 0.64 | MC |
| SRR5560728 | caryopsis | wild_type | 0.63 | MC |
| SRR5560729 | caryopsis | wild_type | 0.36 | MC |
| SRR7265400 | coleoptile | 2dA | 2.96 | MC |
| SRR7265401 | coleoptile | 2dA | 2.70 | MC |
| SRR7265402 | coleoptile | 2dA | 2.48 | MC |
| SRR7265403 | coleoptile | 2dN | 0.54 | MC |
| SRR7265404 | coleoptile | 2dN | 1.41 | MC |
| SRR7265405 | coleoptile | 2dN | 1.10 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 1.01 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.38 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.65 | MC |
| SRR7265373 | embryo | dry seed 0 h | 2.27 | MC |
| SRR7265374 | embryo | dry seed 0 h | 2.87 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.78 | MC |
| SRR7265379 | embryo | 1hN | 3.31 | MC |
| SRR7265389 | embryo | 12hA | 2.02 | MC |
| SRR7265390 | embryo | 12hA | 0.87 | MC |
| SRR7265391 | embryo | 12hN | 1.36 | MC |
| SRR7265392 | embryo | 12hN | 1.57 | MC |
| SRR7265393 | embryo | 12hN | 1.18 | MC |
| SRR7265394 | embryo | 24hA | 3.08 | MC |
| SRR7265395 | embryo | 24hA | 2.04 | MC |
| SRR7265396 | embryo | 24hA | 2.56 | MC |
| SRR7265397 | embryo | 24hN | 0.67 | MC |
| SRR7265398 | embryo | 24hN | 0.73 | MC |
| SRR7265399 | embryo | 24hN | 0.60 | MC |
| SRR2338869 | endosprem | high_temperature | 2.10 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.45 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.98 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.82 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.24 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.43 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.91 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.66 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.19 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.66 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.30 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.55 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.35 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.34 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.31 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.74 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.36 | MC |
| SRR504365 | leaf | wt | 0.25 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.22 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.85 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 1.17 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 1.53 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.36 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.47 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 0.45 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 1.07 | MC |
| SRR6502088 | leaf | control | 0.37 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 0.41 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 0.54 | MC |
| SRR6168973 | leaf | none (control) | 1.56 | MC |
| SRR6168975 | leaf | none (control) | 2.51 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 2.28 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 1.46 | MC |
| SRR6168980 | leaf | none (control) | 1.27 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 1.93 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 2.63 | MC |
| SRR8582888 | panicle | AM | 0.49 | MC |
| SRR8582889 | panicle | AM | 0.42 | MC |
| SRR8582890 | panicle | AM | 0.32 | MC |
| SRR8582891 | panicle | PM | 2.75 | MC |
| SRR8582892 | panicle | PM | 4.05 | MC |
| SRR8582893 | panicle | PM | 2.82 | MC |
| SRR5110429 | panicle | Dawn | 0.39 | MC |
| SRR5110430 | panicle | Dawn | 0.58 | MC |
| SRR4947496 | root | control | 1.48 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 1.48 | MC |
| SRR1633185 | panicle | WT | 5.64 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.37 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.27 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.59 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.59 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 0.91 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 0.87 | MC |
| SRR5126147 | root | "mock,1_day" | 2.56 | MC |
| SRR5126148 | root | "mock,1_day" | 2.00 | MC |
| SRR5126149 | root | "mock,1_day" | 1.35 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 3.15 | MC |
| SRR5126153 | root | "mock,7_days" | 2.28 | MC |
| SRR5126155 | root | "mock,7_days" | 4.35 | MC |
| SRR5126165 | root | "mock,14_days" | 1.18 | MC |
| SRR5126167 | root | "mock,14_days" | 2.87 | MC |
| SRR5126169 | root | "mock,14_days" | 2.88 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 1.30 | MC |
| SRR1213694 | root | wt | 2.27 | MC |
| SRR4947480 | root | control | 2.53 | MC |
| SRR4947481 | root | control | 2.63 | MC |
| SRR4947484 | root | Al | 1.33 | MC |
| SRR4947485 | root | Al | 2.49 | MC |
| SRR4947488 | root | control | 2.74 | MC |
| SRR4947489 | root | control | 2.36 | MC |
| SRR4947492 | root | Al | 1.35 | MC |
| SRR4947493 | root | Al | 1.89 | MC |
| SRR4947497 | root | control | 1.15 | MC |
| SRR4947500 | root | Al | 1.81 | MC |
| SRR4947501 | root | Al | 1.53 | MC |
| SRR4947504 | root | control | 1.32 | MC |
| SRR4947505 | root | control | 1.97 | MC |
| SRR4947508 | root | Al | 1.35 | MC |
| SRR4947509 | root | Al | 1.57 | MC |
| SRR6502091 | root | 100 mM NaCl | 1.79 | MC |
| SRR6502092 | root | 100 mM NaCl | 2.45 | MC |
| SRR6502093 | root | 100 mM NaCl | 4.12 | MC |
| SRR6502094 | root | control | 2.71 | MC |
| SRR6502095 | root | control | 2.55 | MC |
| SRR6502096 | root | control | 2.05 | MC |
| SRR6502103 | root | 100 mM NaCl | 1.19 | MC |
| SRR6502104 | root | 100 mM NaCl | 1.64 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.86 | MC |
| SRR6502106 | root | control | 1.63 | MC |
| SRR6502107 | root | control | 1.94 | MC |
| SRR6502108 | root | control | 3.03 | MC |
| SRR1740434 | root_differentiation_zone | wt | 0.66 | MC |
| SRR2154086 | seedling | wt | 0.80 | MC |
| SRR2154082 | seedling | wt | 1.57 | MC |
| SRR2154083 | seedling | wt | 0.74 | MC |
| SRR2154084 | seedling | wt | 0.64 | MC |
| SRR2154085 | seedling | wt | 0.57 | MC |
| SRR3098741 | seedling | wt | 0.82 | MC |
| SRR3098742 | seedling | wt | 0.43 | MC |
| SRR3098743 | seedling | wt | 0.80 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.41 | MC |
| SRR2857720 | seedling | drought_stress_1h | 0.60 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.27 | MC |
| SRR358792 | seedling | wt | 0.65 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 1.73 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 3.46 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 8.06 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 13.67 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 9.24 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.52 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.63 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.47 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.14 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.85 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 1.35 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 0.76 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 1.01 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 2.82 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 2.12 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 3.32 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 1.18 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 1.09 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 0.94 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.65 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.63 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 0.63 | MC |