| SRR4457249 | 2nd_leaf | DAH4 | 1.03 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 0.32 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 0.62 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.26 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 1.35 | MC |
| SRR6320498 | carpel | wt | 1.24 | MC |
| SRR5560727 | caryopsis | wild_type | 3.58 | MC |
| SRR5560728 | caryopsis | wild_type | 2.43 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.43 | MC |
| SRR7265400 | coleoptile | 2dA | 0.50 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 2.04 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 0.34 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 0.87 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 0.51 | MC |
| SRR2338866 | endosprem | control | 2.36 | MC |
| SRR2338867 | endosprem | control | 1.33 | MC |
| SRR2338868 | endosprem | high_temperature | 0.55 | MC |
| SRR2338869 | endosprem | high_temperature | 1.57 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.35 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.65 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.43 | MC |
| SRR4457235 | flag_leaf | DAH12 | 0.37 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.34 | MC |
| SRR4457243 | flag_leaf | DAH36 | 0.52 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.62 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.63 | MC |
| SRR1213691 | flower | wt | 0.74 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.94 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.74 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 0.74 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.99 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.75 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.95 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.69 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.81 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.73 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.64 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.96 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.90 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.40 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.60 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 0.83 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.33 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.74 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.96 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.26 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.90 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.42 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.84 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.50 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.16 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.36 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.61 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 1.16 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 1.16 | MC |
| SRR1761529 | leaf | drought | 1.16 | MC |
| SRR504365 | leaf | wt | 0.91 | MC |
| SRR6417967 | leaf | H2O_control | 0.51 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.67 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 0.52 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 0.95 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 1.13 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.62 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.92 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 1.02 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.71 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.99 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.79 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.91 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.63 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.59 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.60 | MC |
| SRR1213693 | leaf | wt | 0.75 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 0.73 | MC |
| SRR6502089 | leaf | control | 0.44 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 0.84 | MC |
| SRR5856927 | leaf | control | 0.68 | MC |
| SRR5856928 | leaf | control | 0.94 | MC |
| SRR5856929 | leaf | control | 0.80 | MC |
| SRR5856933 | leaf | control | 0.56 | MC |
| SRR5856935 | leaf | control | 0.71 | MC |
| SRR5856937 | leaf | salt | 0.33 | MC |
| SRR5856938 | leaf | salt | 0.32 | MC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 2.46 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 4.55 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 3.15 | MC |
| SRR6168973 | leaf | none (control) | 1.00 | MC |
| SRR6168974 | leaf | none (control) | 0.36 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 0.60 | MC |
| SRR6168980 | leaf | none (control) | 0.25 | MC |
| SRR6168981 | leaf | none (control) | 0.31 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.24 | MC |
| SRR8582889 | panicle | AM | 0.11 | MC |
| SRR5110429 | panicle | Dawn | 3.34 | MC |
| SRR5110430 | panicle | Dawn | 1.91 | MC |
| SRR5110431 | panicle | Dawn | 1.95 | MC |
| SRR5110432 | panicle | Dawn | 2.19 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 1.98 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 1.40 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 0.88 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 2.49 | MC |
| SRR5110437 | panicle | Dawn + 7h | 1.52 | MC |
| SRR5110438 | panicle | Dawn + 7h | 0.92 | MC |
| SRR5110439 | panicle | Dawn + 7h | 2.34 | MC |
| SRR5110440 | panicle | Dawn + 7h | 1.57 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 2.35 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 2.33 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 1.23 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 2.32 | MC |
| SRR5110445 | panicle | Dusk | 0.97 | MC |
| SRR5110446 | panicle | Dusk | 2.18 | MC |
| SRR5110447 | panicle | Dusk | 2.22 | MC |
| SRR5110448 | panicle | Dusk | 3.77 | MC |
| SRR5110449 | panicle | Dawn + 14h | 2.63 | MC |
| SRR5110451 | panicle | Dawn + 14h | 1.98 | MC |
| SRR5110452 | panicle | Dawn + 14h | 2.95 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 2.54 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 1.07 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 3.05 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 4.56 | MC |
| SRR5110459 | panicle | Dawn + 21h | 2.52 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 1.08 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.39 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.55 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.69 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 0.51 | MC |
| SRR5126149 | root | "mock,1_day" | 0.91 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.62 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.78 | MC |
| SRR5126153 | root | "mock,7_days" | 0.95 | MC |
| SRR5126155 | root | "mock,7_days" | 0.47 | MC |
| SRR5126157 | root | "mock,7_days" | 1.71 | MC |
| SRR5126167 | root | "mock,14_days" | 0.83 | MC |
| SRR5126169 | root | "mock,14_days" | 0.48 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.75 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.36 | MC |
| SRR1213695 | root | wt | 1.20 | MC |
| SRR4947479 | root | control | 0.64 | MC |
| SRR4947480 | root | control | 0.71 | MC |
| SRR4947481 | root | control | 0.73 | MC |
| SRR4947482 | root | Al | 0.81 | MC |
| SRR4947483 | root | Al | 0.42 | MC |
| SRR4947484 | root | Al | 0.77 | MC |
| SRR4947485 | root | Al | 0.68 | MC |
| SRR4947490 | root | Al | 1.52 | MC |
| SRR4947493 | root | Al | 0.70 | MC |
| SRR4947494 | root | control | 1.90 | MC |
| SRR4947497 | root | control | 1.13 | MC |
| SRR4947499 | root | Al | 0.57 | MC |
| SRR4947501 | root | Al | 1.12 | MC |
| SRR4947508 | root | Al | 1.66 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.68 | MC |
| SRR6502092 | root | 100 mM NaCl | 1.02 | MC |
| SRR6502095 | root | control | 0.49 | MC |
| SRR6502103 | root | 100 mM NaCl | 1.96 | MC |
| SRR6502104 | root | 100 mM NaCl | 0.83 | MC |
| SRR6502105 | root | 100 mM NaCl | 1.49 | MC |
| SRR6502106 | root | control | 0.75 | MC |
| SRR6502107 | root | control | 0.47 | MC |
| SRR2154086 | seedling | wt | 1.11 | MC |
| SRR2154083 | seedling | wt | 0.95 | MC |
| SRR2154087 | seedling | wt | 0.90 | MC |
| SRR3098741 | seedling | wt | 0.56 | MC |
| SRR3098742 | seedling | wt | 0.26 | MC |
| SRR3098743 | seedling | wt | 0.33 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.38 | MC |
| SRR1944583 | seedling | no_treatment | 0.56 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 1.39 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 5.76 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.80 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.92 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.61 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.25 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.24 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.50 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.48 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 0.39 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 0.39 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.34 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.58 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.67 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.72 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.37 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.70 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.50 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.43 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.75 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.48 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.55 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.49 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.64 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 0.65 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.45 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.64 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 1.25 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 0.78 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 0.48 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 0.75 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 0.75 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 1.33 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 0.95 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 1.39 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 1.76 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 1.29 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.87 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.58 | MC |