| SRR4457249 | 2nd_leaf | DAH4 | 2.89 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 0.90 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 0.97 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.90 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 1.04 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 1.93 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 1.61 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.36 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 0.68 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.99 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 1.12 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 1.82 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 3.09 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 0.40 | MC |
| SRR3745125 | anther | wt | 1.05 | MC |
| SRR358795 | callus | wt | 2.32 | MC |
| SRR358796 | callus | wt | 5.31 | MC |
| SRR358797 | callus | wt | 3.36 | MC |
| SRR358798 | callus | wt | 3.25 | MC |
| SRR5560727 | caryopsis | wild_type | 1.66 | MC |
| SRR5560728 | caryopsis | wild_type | 2.92 | MC |
| SRR5560729 | caryopsis | wild_type | 4.92 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 1.05 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 1.84 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.61 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 1.01 | MC |
| SRR7265401 | coleoptile | 2dA | 0.83 | MC |
| SRR7265402 | coleoptile | 2dA | 0.45 | MC |
| SRR7265405 | coleoptile | 2dN | 0.33 | MC |
| SRR7265407 | coleoptile | 3dA | 0.40 | MC |
| SRR7265408 | coleoptile | 3dA | 0.39 | MC |
| SRR7265410 | coleoptile | 3dN | 0.47 | MC |
| SRR7265411 | coleoptile | 3dN | 0.39 | MC |
| SRR7265415 | coleoptile | 4dN | 0.61 | MC |
| SRR7265417 | coleoptile | 4dN | 0.53 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 2.66 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 1.23 | MC |
| SRR7265378 | embryo | 1hA | 0.51 | MC |
| SRR7265381 | embryo | 1hN | 0.62 | MC |
| SRR7265386 | embryo | 3hN | 0.90 | MC |
| SRR7265387 | embryo | 3hN | 0.57 | MC |
| SRR7265389 | embryo | 12hA | 0.45 | MC |
| SRR7265391 | embryo | 12hN | 0.83 | MC |
| SRR7265392 | embryo | 12hN | 0.77 | MC |
| SRR7265393 | embryo | 12hN | 1.16 | MC |
| SRR7265396 | embryo | 24hA | 0.52 | MC |
| SRR7265398 | embryo | 24hN | 0.69 | MC |
| SRR7265399 | embryo | 24hN | 0.79 | MC |
| SRR976168 | flag_leaf | wild_type | 1.02 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.72 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.57 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.85 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.32 | MC |
| SRR4457235 | flag_leaf | DAH12 | 1.48 | MC |
| SRR4457236 | flag_leaf | DAH12 | 1.36 | MC |
| SRR4457237 | flag_leaf | DAH20 | 1.55 | MC |
| SRR4457238 | flag_leaf | DAH20 | 1.59 | MC |
| SRR4457239 | flag_leaf | DAH20 | 1.14 | MC |
| SRR4457240 | flag_leaf | DAH28 | 1.76 | MC |
| SRR4457241 | flag_leaf | DAH28 | 2.15 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.34 | MC |
| SRR4457244 | flag_leaf | DAH36 | 0.49 | MC |
| SRR4457245 | flag_leaf | DAH36 | 1.07 | MC |
| SRR4457246 | flag_leaf | DAH44 | 0.41 | MC |
| SRR4457247 | flag_leaf | DAH44 | 1.10 | MC |
| SRR1213690 | flower | wt(flower buds) | 3.21 | MC |
| SRR1213691 | flower | wt | 3.90 | MC |
| SRR8240824 | leaf | wild_type | 2.17 | MC |
| SRR8240825 | leaf | wild_type | 1.64 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.35 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 1.27 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 1.20 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 1.64 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.30 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.24 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.36 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.33 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.10 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.18 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 1.17 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 2.86 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 2.22 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 0.75 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 2.86 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 2.22 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 0.75 | MC |
| SRR1761529 | leaf | drought | 2.86 | MC |
| SRR1761530 | leaf | control | 2.22 | MC |
| SRR1761531 | leaf | control | 0.75 | MC |
| SRR504365 | leaf | wt | 1.48 | MC |
| SRR6417969 | leaf | H2O_control | 0.69 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 2.25 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 3.35 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 3.08 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 2.52 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 3.95 | MC |
| SRR8611901 | leaf | Non-inoculated | 2.20 | MC |
| SRR8611902 | leaf | Non-inoculated | 2.91 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 1.33 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.89 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.77 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 1.80 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 1.69 | MC |
| SRR1213692 | leaf | wt | 0.71 | MC |
| SRR1213693 | leaf | wt | 0.51 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 1.22 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 2.04 | MC |
| SRR6502100 | leaf | control | 0.41 | MC |
| SRR6168974 | leaf | none (control) | 3.35 | MC |
| SRR6168975 | leaf | none (control) | 2.85 | MC |
| SRR8582890 | panicle | AM | 0.33 | MC |
| SRR8582893 | panicle | PM | 0.44 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.74 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 1.16 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.31 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 3.04 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 1.94 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 4.68 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 4.70 | MC |
| SRR5126147 | root | "mock,1_day" | 0.31 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.45 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.40 | MC |
| SRR5126155 | root | "mock,7_days" | 0.30 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.44 | MC |
| SRR5126165 | root | "mock,14_days" | 0.46 | MC |
| SRR5126167 | root | "mock,14_days" | 0.46 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.61 | MC |
| SRR1213694 | root | wt | 0.97 | MC |
| SRR1213695 | root | wt | 0.18 | MC |
| SRR6502095 | root | control | 0.43 | MC |
| SRR6502103 | root | 100 mM NaCl | 1.52 | MC |
| SRR6502104 | root | 100 mM NaCl | 0.53 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.89 | MC |
| SRR6502106 | root | control | 0.46 | MC |
| SRR6502107 | root | control | 0.99 | MC |
| SRR1740434 | root_differentiation_zone | wt | 0.97 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.69 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.49 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.25 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.29 | MC |
| SRR6441554 | seedling | wild_type | 1.91 | MC |
| SRR6441555 | seedling | wild_type | 0.41 | MC |
| SRR2154086 | seedling | wt | 0.70 | MC |
| SRR2154085 | seedling | wt | 0.44 | MC |
| SRR2154087 | seedling | wt | 1.04 | MC |
| SRR3098741 | seedling | wt | 2.06 | MC |
| SRR3098742 | seedling | wt | 1.32 | MC |
| SRR3098743 | seedling | wt | 0.32 | MC |
| SRR2857720 | seedling | drought_stress_1h | 0.63 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.38 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 3.27 | MC |
| SRR1944583 | seedling | no_treatment | 1.43 | MC |
| SRR358794 | seedling | wt | 0.64 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 3.88 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 7.77 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 6.11 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 3.05 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 3.25 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 3.95 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 3.06 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 2.96 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.37 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.46 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.67 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.28 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.15 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.24 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.40 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 2.68 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 3.11 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.61 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.60 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.75 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.55 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.32 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.32 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.73 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.62 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.67 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 0.89 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 1.37 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 0.88 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 2.01 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 1.32 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 1.16 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 0.66 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 2.40 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 3.82 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 2.85 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 0.94 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 1.06 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 1.49 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 1.67 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 1.18 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 1.36 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 2.46 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 3.69 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 1.85 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 2.39 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 1.63 | MC |