| SRR358797 | callus | wt | 7.35 | MC |
| SRR6320473 | carpel | wt | 4.89 | MC |
| SRR6320498 | carpel | wt | 4.32 | MC |
| SRR5560727 | caryopsis | wild_type | 2.64 | MC |
| SRR5560728 | caryopsis | wild_type | 1.29 | MC |
| SRR5560729 | caryopsis | wild_type | 2.04 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.42 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 1.59 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.68 | MC |
| SRR7265400 | coleoptile | 2dA | 0.57 | MC |
| SRR7265401 | coleoptile | 2dA | 1.24 | MC |
| SRR7265402 | coleoptile | 2dA | 0.77 | MC |
| SRR7265403 | coleoptile | 2dN | 0.79 | MC |
| SRR7265404 | coleoptile | 2dN | 2.99 | MC |
| SRR7265405 | coleoptile | 2dN | 1.39 | MC |
| SRR7265417 | coleoptile | 4dN | 0.45 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 0.42 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 0.84 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 0.50 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 3.18 | MC |
| SRR7265374 | embryo | dry seed 0 h | 3.71 | MC |
| SRR7265375 | embryo | dry seed 0 h | 1.05 | MC |
| SRR7265388 | embryo | 12hA | 4.72 | MC |
| SRR7265394 | embryo | 24hA | 0.68 | MC |
| SRR7265395 | embryo | 24hA | 2.12 | MC |
| SRR7265396 | embryo | 24hA | 1.70 | MC |
| SRR7265397 | embryo | 24hN | 2.44 | MC |
| SRR7265399 | embryo | 24hN | 4.50 | MC |
| SRR976168 | flag_leaf | wild_type | 0.79 | MC |
| SRR1213690 | flower | wt(flower buds) | 3.64 | MC |
| SRR8060835 | leaf | wild_type | 0.57 | MC |
| SRR8060836 | leaf | wild_type | 1.23 | MC |
| SRR8060837 | leaf | wild_type | 0.49 | MC |
| SRR8240824 | leaf | wild_type | 0.38 | MC |
| SRR8240818 | leaf | wild_type | 0.31 | MC |
| SRR8240820 | leaf | wild_type | 0.20 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.37 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 4.57 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 6.26 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.51 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 3.38 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 2.15 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 1.92 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 1.69 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 5.27 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 5.31 | MC |
| SRR1761529 | leaf | drought | 5.31 | MC |
| SRR6417967 | leaf | H2O_control | 2.24 | MC |
| SRR6417968 | leaf | H2O_control | 2.72 | MC |
| SRR6417969 | leaf | H2O_control | 1.43 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 3.39 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 3.75 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.34 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 2.07 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.87 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.54 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.58 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.26 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.40 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.45 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.71 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.65 | MC |
| SRR1213692 | leaf | wt | 0.33 | MC |
| SRR1213693 | leaf | wt | 0.24 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 4.48 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 4.38 | MC |
| SRR6502089 | leaf | control | 1.15 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 2.36 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 0.86 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 0.45 | MC |
| SRR6502101 | leaf | control | 0.47 | MC |
| SRR6502102 | leaf | control | 0.49 | MC |
| SRR5856927 | leaf | control | 0.26 | MC |
| SRR5856928 | leaf | control | 0.29 | MC |
| SRR5856930 | leaf | salt | 1.22 | MC |
| SRR5856931 | leaf | salt | 1.10 | MC |
| SRR5856932 | leaf | salt | 1.39 | MC |
| SRR5856933 | leaf | control | 0.23 | MC |
| SRR5856935 | leaf | control | 0.31 | MC |
| SRR5856938 | leaf | salt | 1.76 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 1.46 | MC |
| SRR8582892 | panicle | PM | 0.61 | MC |
| SRR4947496 | root | control | 2.42 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 0.81 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 0.65 | MC |
| SRR5110446 | panicle | Dusk | 0.40 | MC |
| SRR5110447 | panicle | Dusk | 0.33 | MC |
| SRR5110448 | panicle | Dusk | 0.89 | MC |
| SRR5110450 | panicle | Dawn + 14h | 0.56 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 2.88 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 3.01 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 2.20 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 2.42 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 0.49 | MC |
| SRR5126149 | root | "mock,1_day" | 3.53 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 3.02 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 3.36 | MC |
| SRR5126153 | root | "mock,7_days" | 1.26 | MC |
| SRR5126157 | root | "mock,7_days" | 3.71 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 1.15 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 4.36 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 3.89 | MC |
| SRR5126165 | root | "mock,14_days" | 3.45 | MC |
| SRR5126169 | root | "mock,14_days" | 1.41 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 2.38 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 2.52 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 1.56 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 2.03 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 1.09 | MC |
| SRR1213694 | root | wt | 2.45 | MC |
| SRR1213695 | root | wt | 0.22 | MC |
| SRR4947480 | root | control | 2.68 | MC |
| SRR4947481 | root | control | 2.92 | MC |
| SRR4947484 | root | Al | 2.27 | MC |
| SRR4947485 | root | Al | 2.70 | MC |
| SRR4947488 | root | control | 2.28 | MC |
| SRR4947489 | root | control | 1.40 | MC |
| SRR4947492 | root | Al | 2.90 | MC |
| SRR4947493 | root | Al | 2.20 | MC |
| SRR4947497 | root | control | 0.80 | MC |
| SRR4947500 | root | Al | 1.57 | MC |
| SRR4947501 | root | Al | 1.17 | MC |
| SRR4947504 | root | control | 2.90 | MC |
| SRR4947505 | root | control | 2.62 | MC |
| SRR4947508 | root | Al | 2.83 | MC |
| SRR6502091 | root | 100 mM NaCl | 1.56 | MC |
| SRR6502092 | root | 100 mM NaCl | 1.16 | MC |
| SRR6502093 | root | 100 mM NaCl | 1.28 | MC |
| SRR6502094 | root | control | 0.66 | MC |
| SRR6502095 | root | control | 0.43 | MC |
| SRR6502096 | root | control | 0.48 | MC |
| SRR6502103 | root | 100 mM NaCl | 0.87 | MC |
| SRR6502104 | root | 100 mM NaCl | 1.13 | MC |
| SRR6502105 | root | 100 mM NaCl | 1.31 | MC |
| SRR6502106 | root | control | 0.47 | MC |
| SRR6502107 | root | control | 0.63 | MC |
| SRR6502108 | root | control | 0.72 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.34 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.28 | MC |
| SRR6441554 | seedling | wild_type | 0.27 | MC |
| SRR6441555 | seedling | wild_type | 0.27 | MC |
| SRR2154086 | seedling | wt | 2.72 | MC |
| SRR2154082 | seedling | wt | 0.42 | MC |
| SRR2154083 | seedling | wt | 0.81 | MC |
| SRR2154084 | seedling | wt | 0.39 | MC |
| SRR2154085 | seedling | wt | 3.03 | MC |
| SRR3098741 | seedling | wt | 0.19 | MC |
| SRR3098743 | seedling | wt | 0.18 | MC |
| SRR2857720 | seedling | drought_stress_1h | 2.75 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 2.47 | MC |
| SRR1944583 | seedling | no_treatment | 0.53 | MC |
| SRR358791 | seedling | wt | 3.22 | MC |
| SRR358792 | seedling | wt | 2.91 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 3.50 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 4.17 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 8.22 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 4.67 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.71 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.06 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.79 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 3.19 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.80 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 1.57 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.88 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.42 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.43 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.57 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.75 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.63 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.59 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.83 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.19 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.67 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 1.00 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.35 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.39 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.26 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 0.40 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 0.83 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.29 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.51 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.19 | MC |