| SRR5560729 | caryopsis | wild_type | 0.32 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.65 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.56 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.42 | MC |
| SRR7265400 | coleoptile | 2dA | 0.67 | MC |
| SRR7265401 | coleoptile | 2dA | 0.31 | MC |
| SRR7265402 | coleoptile | 2dA | 0.46 | MC |
| SRR7265403 | coleoptile | 2dN | 0.38 | MC |
| SRR7265404 | coleoptile | 2dN | 0.34 | MC |
| SRR7265408 | coleoptile | 3dA | 0.39 | MC |
| SRR7265409 | coleoptile | 3dN | 0.40 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.47 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.54 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 1.67 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 1.93 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 0.67 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 1.42 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.58 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 2.99 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 1.95 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 2.90 | MC |
| SRR7265377 | embryo | 1hA | 0.49 | MC |
| SRR7265380 | embryo | 1hN | 0.45 | MC |
| SRR7265381 | embryo | 1hN | 0.36 | MC |
| SRR7265382 | embryo | 3hA | 0.96 | MC |
| SRR7265384 | embryo | 3hA | 0.59 | MC |
| SRR7265390 | embryo | 12hA | 0.45 | MC |
| SRR7265395 | embryo | 24hA | 0.48 | MC |
| SRR7265398 | embryo | 24hN | 0.50 | MC |
| SRR1213691 | flower | wt | 0.46 | MC |
| SRR8060835 | leaf | wild_type | 0.29 | MC |
| SRR8060836 | leaf | wild_type | 0.79 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.48 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.98 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 1.12 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 0.47 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.25 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.24 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.23 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.27 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.42 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.55 | MC |
| SRR6502088 | leaf | control | 0.55 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 0.48 | MC |
| SRR5856927 | leaf | control | 0.65 | MC |
| SRR5856928 | leaf | control | 0.61 | MC |
| SRR5856929 | leaf | control | 0.38 | MC |
| SRR5856930 | leaf | salt | 0.29 | MC |
| SRR5856931 | leaf | salt | 0.31 | MC |
| SRR5856932 | leaf | salt | 0.29 | MC |
| SRR5856933 | leaf | control | 0.49 | MC |
| SRR5856934 | leaf | control | 0.41 | MC |
| SRR5856935 | leaf | control | 0.41 | MC |
| SRR5856936 | leaf | salt | 0.22 | MC |
| SRR5856938 | leaf | salt | 0.26 | MC |
| SRR6168973 | leaf | none (control) | 0.99 | MC |
| SRR6168974 | leaf | none (control) | 0.33 | MC |
| SRR5110429 | panicle | Dawn | 1.55 | MC |
| SRR5110430 | panicle | Dawn | 0.79 | MC |
| SRR5110431 | panicle | Dawn | 0.62 | MC |
| SRR5110432 | panicle | Dawn | 1.40 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 1.45 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 1.36 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 1.00 | MC |
| SRR5110438 | panicle | Dawn + 7h | 2.19 | MC |
| SRR5110439 | panicle | Dawn + 7h | 0.82 | MC |
| SRR5110440 | panicle | Dawn + 7h | 0.93 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 0.48 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 0.73 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 0.88 | MC |
| SRR5110445 | panicle | Dusk | 0.73 | MC |
| SRR5110446 | panicle | Dusk | 1.31 | MC |
| SRR5110447 | panicle | Dusk | 1.92 | MC |
| SRR5110448 | panicle | Dusk | 1.35 | MC |
| SRR5110450 | panicle | Dawn + 14h | 1.49 | MC |
| SRR5110451 | panicle | Dawn + 14h | 1.09 | MC |
| SRR5110452 | panicle | Dawn + 14h | 1.74 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 1.80 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 1.01 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 1.29 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 1.80 | MC |
| SRR5110457 | panicle | Dawn + 21h | 1.74 | MC |
| SRR5110458 | panicle | Dawn + 21h | 1.13 | MC |
| SRR5110459 | panicle | Dawn + 21h | 1.28 | MC |
| SRR5110460 | panicle | Dawn + 21h | 0.99 | MC |
| SRR1633182 | panicle | WT | 0.26 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 0.73 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 0.72 | MC |
| SRR5126153 | root | "mock,7_days" | 0.34 | MC |
| SRR5126155 | root | "mock,7_days" | 0.38 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.41 | MC |
| SRR4947479 | root | control | 0.65 | MC |
| SRR4947491 | root | Al | 0.49 | MC |
| SRR4947499 | root | Al | 0.55 | MC |
| SRR4947502 | root | control | 0.92 | MC |
| SRR4947503 | root | control | 0.84 | MC |
| SRR4947506 | root | Al | 0.47 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.58 | MC |
| SRR6502092 | root | 100 mM NaCl | 0.48 | MC |
| SRR6502096 | root | control | 0.34 | MC |
| SRR6502104 | root | 100 mM NaCl | 0.65 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.82 | MC |
| SRR6502106 | root | control | 0.43 | MC |
| SRR6502107 | root | control | 0.44 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.43 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.32 | MC |
| SRR1740428 | root_meristematic_zone | wt | 0.86 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.44 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.32 | MC |
| SRR6441555 | seedling | wild_type | 0.23 | MC |
| SRR2154086 | seedling | wt | 0.42 | MC |
| SRR2154082 | seedling | wt | 1.16 | MC |
| SRR2154083 | seedling | wt | 0.32 | MC |
| SRR2154084 | seedling | wt | 0.89 | MC |
| SRR3098741 | seedling | wt | 0.39 | MC |
| SRR3098742 | seedling | wt | 0.63 | MC |
| SRR3098743 | seedling | wt | 0.58 | MC |
| SRR2857720 | seedling | drought_stress_1h | 0.40 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 3.25 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 3.63 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 3.96 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 13.60 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.48 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 6.03 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.32 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.43 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.73 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.47 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.38 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.33 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.36 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.33 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.56 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.41 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 3.13 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 1.82 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 2.52 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 4.08 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 2.69 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 3.65 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 4.67 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 2.89 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 3.97 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 3.64 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 2.80 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 3.73 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 3.59 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 2.18 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 3.17 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 5.20 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 3.23 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 3.28 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 3.53 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 2.27 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 3.80 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 3.43 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 1.19 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 1.74 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 1.95 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 1.76 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 2.31 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 1.21 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.47 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.66 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.37 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 1.26 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 1.87 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 1.63 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.84 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.56 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 0.63 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 0.65 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 0.69 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 0.38 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.47 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.41 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.43 | MC |