| SRR358795 | callus | wt | 9.85 | MC |
| SRR358797 | callus | wt | 6.13 | MC |
| SRR358798 | callus | wt | 7.84 | MC |
| SRR5560729 | caryopsis | wild_type | 0.45 | MC |
| SRR4947495 | root | control | 3.33 | MC |
| SRR7265400 | coleoptile | 2dA | 3.75 | MC |
| SRR7265402 | coleoptile | 2dA | 3.70 | MC |
| SRR7265403 | coleoptile | 2dN | 3.03 | MC |
| SRR7265404 | coleoptile | 2dN | 2.35 | MC |
| SRR7265405 | coleoptile | 2dN | 3.21 | MC |
| SRR7265406 | coleoptile | 3dA | 0.83 | MC |
| SRR7265407 | coleoptile | 3dA | 1.04 | MC |
| SRR7265408 | coleoptile | 3dA | 1.00 | MC |
| SRR7265409 | coleoptile | 3dN | 0.65 | MC |
| SRR7265410 | coleoptile | 3dN | 1.21 | MC |
| SRR7265411 | coleoptile | 3dN | 1.05 | MC |
| SRR7265412 | coleoptile | 4dA | 0.47 | MC |
| SRR7265413 | coleoptile | 4dA | 1.12 | MC |
| SRR7265414 | coleoptile | 4dA | 0.70 | MC |
| SRR7265415 | coleoptile | 4dN | 1.64 | MC |
| SRR7265416 | coleoptile | 4dN | 1.21 | MC |
| SRR7265417 | coleoptile | 4dN | 1.57 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 2.22 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 1.24 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 2.24 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 1.97 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 1.89 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 1.93 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 2.57 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 1.87 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 1.97 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 3.93 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 2.65 | MC |
| SRR7265374 | embryo | dry seed 0 h | 0.89 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.46 | MC |
| SRR7265376 | embryo | 1hA | 0.91 | MC |
| SRR7265377 | embryo | 1hA | 1.11 | MC |
| SRR7265378 | embryo | 1hA | 1.36 | MC |
| SRR7265379 | embryo | 1hN | 1.08 | MC |
| SRR7265380 | embryo | 1hN | 1.17 | MC |
| SRR7265381 | embryo | 1hN | 1.25 | MC |
| SRR7265382 | embryo | 3hA | 1.80 | MC |
| SRR7265383 | embryo | 3hA | 1.85 | MC |
| SRR7265384 | embryo | 3hA | 0.89 | MC |
| SRR7265385 | embryo | 3hN | 1.48 | MC |
| SRR7265386 | embryo | 3hN | 1.46 | MC |
| SRR7265387 | embryo | 3hN | 2.08 | MC |
| SRR7265391 | embryo | 12hN | 3.63 | MC |
| SRR7265392 | embryo | 12hN | 3.96 | MC |
| SRR7265394 | embryo | 24hA | 3.15 | MC |
| SRR7265395 | embryo | 24hA | 4.36 | MC |
| SRR7265396 | embryo | 24hA | 4.42 | MC |
| SRR7265397 | embryo | 24hN | 5.13 | MC |
| SRR7265398 | embryo | 24hN | 3.12 | MC |
| SRR7265399 | embryo | 24hN | 3.78 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.46 | MC |
| SRR1213691 | flower | wt | 0.81 | MC |
| SRR8240824 | leaf | wild_type | 1.52 | MC |
| SRR8240818 | leaf | wild_type | 0.30 | MC |
| SRR8240820 | leaf | wild_type | 0.35 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 2.02 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.44 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.34 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 0.45 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 0.38 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.37 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.23 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.21 | MC |
| SRR6502089 | leaf | control | 0.44 | MC |
| SRR6502100 | leaf | control | 0.90 | MC |
| SRR6502101 | leaf | control | 0.33 | MC |
| SRR5856927 | leaf | control | 0.27 | MC |
| SRR5856928 | leaf | control | 0.84 | MC |
| SRR5856929 | leaf | control | 0.44 | MC |
| SRR5856930 | leaf | salt | 0.18 | MC |
| SRR5856931 | leaf | salt | 0.16 | MC |
| SRR5856932 | leaf | salt | 0.53 | MC |
| SRR5856933 | leaf | control | 0.52 | MC |
| SRR5856934 | leaf | control | 0.26 | MC |
| SRR5856935 | leaf | control | 0.34 | MC |
| SRR5856936 | leaf | salt | 0.14 | MC |
| SRR5856937 | leaf | salt | 0.54 | MC |
| SRR5856938 | leaf | salt | 0.68 | MC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 1.37 | MC |
| SRR6168973 | leaf | none (control) | 1.10 | MC |
| SRR6168974 | leaf | none (control) | 1.53 | MC |
| SRR6168975 | leaf | none (control) | 1.09 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 2.72 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.36 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.39 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.39 | MC |
| SRR5110429 | panicle | Dawn | 0.60 | MC |
| SRR5110430 | panicle | Dawn | 1.64 | MC |
| SRR5110431 | panicle | Dawn | 0.45 | MC |
| SRR4947496 | root | control | 1.36 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 0.37 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 0.72 | MC |
| SRR5110438 | panicle | Dawn + 7h | 0.73 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 1.10 | MC |
| SRR5110445 | panicle | Dusk | 0.68 | MC |
| SRR5110446 | panicle | Dusk | 0.74 | MC |
| SRR5110447 | panicle | Dusk | 1.40 | MC |
| SRR5110449 | panicle | Dawn + 14h | 1.04 | MC |
| SRR5110450 | panicle | Dawn + 14h | 0.63 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.25 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 0.73 | MC |
| SRR5110458 | panicle | Dawn + 21h | 0.41 | MC |
| SRR5110459 | panicle | Dawn + 21h | 0.47 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.17 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 1.25 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 1.40 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 2.12 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 1.50 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 4.78 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 5.62 | MC |
| SRR5126147 | root | "mock,1_day" | 2.99 | MC |
| SRR5126148 | root | "mock,1_day" | 1.37 | MC |
| SRR5126149 | root | "mock,1_day" | 0.80 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.82 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 1.00 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 2.85 | MC |
| SRR5126153 | root | "mock,7_days" | 2.28 | MC |
| SRR5126155 | root | "mock,7_days" | 0.92 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.77 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.57 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 2.42 | MC |
| SRR5126167 | root | "mock,14_days" | 0.83 | MC |
| SRR5126169 | root | "mock,14_days" | 1.22 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 1.54 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 1.04 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.83 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 1.16 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.57 | MC |
| SRR1213694 | root | wt | 0.61 | MC |
| SRR4947478 | root | control | 1.95 | MC |
| SRR4947479 | root | control | 3.93 | MC |
| SRR4947480 | root | control | 2.62 | MC |
| SRR4947481 | root | control | 1.74 | MC |
| SRR4947483 | root | Al | 3.79 | MC |
| SRR4947484 | root | Al | 3.17 | MC |
| SRR4947485 | root | Al | 2.23 | MC |
| SRR4947487 | root | control | 2.32 | MC |
| SRR4947488 | root | control | 1.96 | MC |
| SRR4947489 | root | control | 2.90 | MC |
| SRR4947490 | root | Al | 3.02 | MC |
| SRR4947491 | root | Al | 3.54 | MC |
| SRR4947492 | root | Al | 2.77 | MC |
| SRR4947493 | root | Al | 3.22 | MC |
| SRR4947494 | root | control | 2.16 | MC |
| SRR4947497 | root | control | 1.74 | MC |
| SRR4947498 | root | Al | 4.97 | MC |
| SRR4947499 | root | Al | 4.53 | MC |
| SRR4947500 | root | Al | 2.09 | MC |
| SRR4947501 | root | Al | 2.52 | MC |
| SRR4947502 | root | control | 1.89 | MC |
| SRR4947503 | root | control | 2.20 | MC |
| SRR4947504 | root | control | 3.32 | MC |
| SRR4947505 | root | control | 1.68 | MC |
| SRR4947506 | root | Al | 2.54 | MC |
| SRR4947507 | root | Al | 5.21 | MC |
| SRR4947508 | root | Al | 2.40 | MC |
| SRR4947509 | root | Al | 3.93 | MC |
| SRR6502091 | root | 100 mM NaCl | 1.23 | MC |
| SRR6502092 | root | 100 mM NaCl | 2.30 | MC |
| SRR6502093 | root | 100 mM NaCl | 1.45 | MC |
| SRR6502094 | root | control | 1.67 | MC |
| SRR6502095 | root | control | 0.64 | MC |
| SRR6502103 | root | 100 mM NaCl | 1.68 | MC |
| SRR6502104 | root | 100 mM NaCl | 1.64 | MC |
| SRR6502105 | root | 100 mM NaCl | 2.37 | MC |
| SRR6502106 | root | control | 1.02 | MC |
| SRR6502107 | root | control | 1.25 | MC |
| SRR6502108 | root | control | 1.83 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.95 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.91 | MC |
| SRR1740428 | root_meristematic_zone | wt | 2.21 | MC |
| SRR1740429 | root_meristematic_zone | wt | 2.47 | MC |
| SRR2154085 | seedling | wt | 2.03 | MC |
| SRR3098741 | seedling | wt | 0.37 | MC |
| SRR3098742 | seedling | wt | 0.45 | MC |
| SRR3098743 | seedling | wt | 0.19 | MC |
| SRR2857719 | seedling | drought_stress_0h | 3.75 | MC |
| SRR2857720 | seedling | drought_stress_1h | 1.87 | MC |
| SRR2857721 | seedling | drought_stress_6h | 2.30 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 5.10 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 6.85 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.18 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.96 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.36 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.30 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.69 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.51 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.33 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.45 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.83 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.59 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.57 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.69 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.47 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.81 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.28 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.87 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.66 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.46 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 8.05 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 7.40 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 5.93 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 1.00 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 0.44 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 0.54 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 0.83 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 0.54 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.38 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.21 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.25 | MC |