| SRR358797 | callus | wt | 1.51 | MC |
| SRR358798 | callus | wt | 0.97 | MC |
| SRR7265401 | coleoptile | 2dA | 0.30 | MC |
| SRR7265403 | coleoptile | 2dN | 0.68 | MC |
| SRR7265404 | coleoptile | 2dN | 0.33 | MC |
| SRR7265405 | coleoptile | 2dN | 0.62 | MC |
| SRR7265416 | coleoptile | 4dN | 0.50 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.57 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 0.45 | MC |
| SRR7265376 | embryo | 1hA | 0.37 | MC |
| SRR7265388 | embryo | 12hA | 0.52 | MC |
| SRR7265389 | embryo | 12hA | 0.84 | MC |
| SRR7265390 | embryo | 12hA | 0.80 | MC |
| SRR7265392 | embryo | 12hN | 0.44 | MC |
| SRR7265395 | embryo | 24hA | 0.60 | MC |
| SRR7265398 | embryo | 24hN | 0.64 | MC |
| SRR7265399 | embryo | 24hN | 0.45 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.35 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.19 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.20 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.29 | MC |
| SRR504365 | leaf | wt | 0.19 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.47 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.39 | MC |
| SRR6168980 | leaf | none (control) | 0.20 | MC |
| SRR6168981 | leaf | none (control) | 0.33 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.34 | MC |
| SRR1633182 | panicle | WT | 0.66 | MC |
| SRR1633185 | panicle | WT | 0.95 | MC |
| SRR5126147 | root | "mock,1_day" | 0.48 | MC |
| SRR5126148 | root | "mock,1_day" | 0.49 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.50 | MC |
| SRR5126153 | root | "mock,7_days" | 0.43 | MC |
| SRR5126155 | root | "mock,7_days" | 0.49 | MC |
| SRR5126157 | root | "mock,7_days" | 0.39 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.62 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.37 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.61 | MC |
| SRR5126165 | root | "mock,14_days" | 0.34 | MC |
| SRR5126167 | root | "mock,14_days" | 0.33 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.53 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.33 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.42 | MC |
| SRR4947484 | root | Al | 0.60 | MC |
| SRR4947489 | root | control | 0.72 | MC |
| SRR6502092 | root | 100 mM NaCl | 0.83 | MC |
| SRR6502093 | root | 100 mM NaCl | 0.91 | MC |
| SRR6502094 | root | control | 0.51 | MC |
| SRR6502096 | root | control | 0.55 | MC |
| SRR6502103 | root | 100 mM NaCl | 0.77 | MC |
| SRR6502104 | root | 100 mM NaCl | 0.44 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.76 | MC |
| SRR6502106 | root | control | 0.66 | MC |
| SRR6502107 | root | control | 0.32 | MC |
| SRR6502108 | root | control | 1.13 | MC |
| SRR1740431 | root_elongation_zone | wt | 1.00 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.54 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.68 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.69 | MC |
| SRR1740430 | root_meristematic_zone | wt | 1.37 | MC |
| SRR6441554 | seedling | wild_type | 0.39 | MC |
| SRR2154086 | seedling | wt | 0.57 | MC |
| SRR2154083 | seedling | wt | 0.83 | MC |
| SRR2154085 | seedling | wt | 0.41 | MC |
| SRR2154087 | seedling | wt | 0.73 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 1.91 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.66 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 2.71 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 10.39 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.69 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.66 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.91 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.37 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.06 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.40 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 0.64 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 0.76 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 0.81 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 0.54 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 0.53 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 0.77 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 0.55 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 0.52 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 0.56 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 0.54 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 0.72 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 0.45 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.40 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.68 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.84 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.68 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 0.56 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.68 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 0.38 | MC |