| SRR4457249 | 2nd_leaf | DAH4 | 3.04 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 1.70 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 1.65 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 2.10 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 2.20 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 1.81 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 2.22 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 1.61 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 3.09 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 3.61 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 3.00 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 3.23 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 2.73 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 3.70 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 4.12 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 4.65 | MC |
| SRR358795 | callus | wt | 3.01 | MC |
| SRR358797 | callus | wt | 2.91 | MC |
| SRR358798 | callus | wt | 4.32 | MC |
| SRR5560727 | caryopsis | wild_type | 3.16 | MC |
| SRR5560728 | caryopsis | wild_type | 3.29 | MC |
| SRR5560729 | caryopsis | wild_type | 4.05 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 4.36 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 2.10 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 2.98 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 3.78 | MC |
| SRR7265401 | coleoptile | 2dA | 0.60 | MC |
| SRR7265402 | coleoptile | 2dA | 0.46 | MC |
| SRR7265404 | coleoptile | 2dN | 0.36 | MC |
| SRR7265405 | coleoptile | 2dN | 0.51 | MC |
| SRR7265406 | coleoptile | 3dA | 0.30 | MC |
| SRR7265407 | coleoptile | 3dA | 0.43 | MC |
| SRR7265408 | coleoptile | 3dA | 0.43 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 0.68 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 3.83 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.41 | MC |
| SRR7265374 | embryo | dry seed 0 h | 1.12 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.60 | MC |
| SRR7265376 | embryo | 1hA | 0.74 | MC |
| SRR7265378 | embryo | 1hA | 0.67 | MC |
| SRR7265379 | embryo | 1hN | 0.60 | MC |
| SRR7265380 | embryo | 1hN | 0.75 | MC |
| SRR7265381 | embryo | 1hN | 0.92 | MC |
| SRR7265385 | embryo | 3hN | 0.59 | MC |
| SRR7265386 | embryo | 3hN | 0.30 | MC |
| SRR7265387 | embryo | 3hN | 0.62 | MC |
| SRR7265390 | embryo | 12hA | 0.50 | MC |
| SRR7265391 | embryo | 12hN | 0.66 | MC |
| SRR7265393 | embryo | 12hN | 0.44 | MC |
| SRR7265394 | embryo | 24hA | 0.64 | MC |
| SRR7265395 | embryo | 24hA | 0.73 | MC |
| SRR2338866 | endosprem | control | 3.06 | MC |
| SRR2338867 | endosprem | control | 1.13 | MC |
| SRR2338868 | endosprem | high_temperature | 0.94 | MC |
| SRR2338869 | endosprem | high_temperature | 2.62 | MC |
| SRR976168 | flag_leaf | wild_type | 1.74 | MC |
| SRR4457231 | flag_leaf | DAH4 | 1.82 | MC |
| SRR4457232 | flag_leaf | DAH4 | 2.69 | MC |
| SRR4457233 | flag_leaf | DAH4 | 2.13 | MC |
| SRR4457234 | flag_leaf | DAH12 | 1.88 | MC |
| SRR4457235 | flag_leaf | DAH12 | 3.41 | MC |
| SRR4457236 | flag_leaf | DAH12 | 2.77 | MC |
| SRR4457239 | flag_leaf | DAH20 | 2.99 | MC |
| SRR4457242 | flag_leaf | DAH28 | 2.88 | MC |
| SRR4457243 | flag_leaf | DAH36 | 2.72 | MC |
| SRR4457244 | flag_leaf | DAH36 | 2.92 | MC |
| SRR4457245 | flag_leaf | DAH36 | 3.69 | MC |
| SRR4457247 | flag_leaf | DAH44 | 3.81 | MC |
| SRR4457248 | flag_leaf | DAH44 | 5.18 | MC |
| SRR8240824 | leaf | wild_type | 1.98 | MC |
| SRR8240825 | leaf | wild_type | 1.92 | MC |
| SRR8240818 | leaf | wild_type | 0.86 | MC |
| SRR8240819 | leaf | wild_type | 1.66 | MC |
| SRR8240820 | leaf | wild_type | 2.24 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 3.78 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 4.18 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 3.88 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 4.24 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 3.50 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 3.17 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 2.94 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 2.18 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 3.07 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 4.23 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 3.91 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.86 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 4.95 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 4.59 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 2.35 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 3.82 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 2.28 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 3.83 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 2.97 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 2.07 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 4.21 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 3.20 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 3.93 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 3.32 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 4.85 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 3.24 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 3.87 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.91 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 3.46 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 2.98 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 2.23 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 3.70 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 3.94 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 3.73 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 4.75 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 3.97 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 3.32 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 1.83 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 2.37 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 2.87 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 3.32 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 1.83 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 2.37 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 2.87 | MC |
| SRR1761528 | leaf | drought | 3.32 | MC |
| SRR1761529 | leaf | drought | 1.83 | MC |
| SRR1761530 | leaf | control | 2.37 | MC |
| SRR1761531 | leaf | control | 2.87 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.96 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.88 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.01 | MC |
| SRR6417967 | leaf | H2O_control | 3.82 | MC |
| SRR6417968 | leaf | H2O_control | 2.88 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 2.25 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 2.59 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 2.40 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 2.71 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 3.13 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 4.86 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.87 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 1.29 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 2.26 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 4.69 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 3.38 | MC |
| SRR6168975 | leaf | none (control) | 3.44 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 3.42 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 1.58 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 3.65 | MC |
| SRR6168979 | leaf | none (control) | 0.52 | MC |
| SRR6168980 | leaf | none (control) | 0.28 | MC |
| SRR6168981 | leaf | none (control) | 0.53 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 1.24 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 1.05 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.49 | MC |
| SRR8582888 | panicle | AM | 2.40 | MC |
| SRR8582890 | panicle | AM | 1.62 | MC |
| SRR8582891 | panicle | PM | 3.77 | MC |
| SRR8582892 | panicle | PM | 3.46 | MC |
| SRR8582893 | panicle | PM | 3.86 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 1.83 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.31 | MC |
| SRR1633182 | panicle | WT | 2.43 | MC |
| SRR1633185 | panicle | WT | 2.49 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 1.17 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 1.08 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 2.87 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 2.85 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 3.67 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 4.15 | MC |
| SRR5126147 | root | "mock,1_day" | 1.65 | MC |
| SRR5126148 | root | "mock,1_day" | 2.50 | MC |
| SRR5126149 | root | "mock,1_day" | 2.13 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 1.78 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 1.58 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 3.70 | MC |
| SRR5126153 | root | "mock,7_days" | 2.35 | MC |
| SRR5126155 | root | "mock,7_days" | 1.92 | MC |
| SRR5126157 | root | "mock,7_days" | 1.44 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 2.71 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 3.16 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 2.39 | MC |
| SRR5126165 | root | "mock,14_days" | 2.84 | MC |
| SRR5126167 | root | "mock,14_days" | 1.34 | MC |
| SRR5126169 | root | "mock,14_days" | 2.25 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 2.68 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 2.84 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 2.92 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 2.15 | MC |
| SRR1213694 | root | wt | 1.81 | MC |
| SRR1213695 | root | wt | 2.94 | MC |
| SRR6502091 | root | 100 mM NaCl | 2.88 | MC |
| SRR6502092 | root | 100 mM NaCl | 2.39 | MC |
| SRR6502093 | root | 100 mM NaCl | 2.57 | MC |
| SRR6502094 | root | control | 1.89 | MC |
| SRR6502095 | root | control | 4.00 | MC |
| SRR6502096 | root | control | 2.12 | MC |
| SRR6502103 | root | 100 mM NaCl | 2.87 | MC |
| SRR6502104 | root | 100 mM NaCl | 0.91 | MC |
| SRR6502105 | root | 100 mM NaCl | 2.70 | MC |
| SRR6502106 | root | control | 2.79 | MC |
| SRR6502107 | root | control | 2.51 | MC |
| SRR6502108 | root | control | 2.60 | MC |
| SRR1740434 | root_differentiation_zone | wt | 2.06 | MC |
| SRR1740435 | root_differentiation_zone | wt | 1.57 | MC |
| SRR1740436 | root_differentiation_zone | wt | 1.85 | MC |
| SRR1740431 | root_elongation_zone | wt | 3.11 | MC |
| SRR1740432 | root_elongation_zone | wt | 2.88 | MC |
| SRR2857719 | seedling | drought_stress_0h | 1.84 | MC |
| SRR2857720 | seedling | drought_stress_1h | 1.19 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.90 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 2.10 | MC |
| SRR358791 | seedling | wt | 4.47 | MC |
| SRR358792 | seedling | wt | 3.89 | MC |
| SRR358793 | seedling | wt | 1.02 | MC |
| SRR358794 | seedling | wt | 1.85 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 3.34 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 5.75 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 6.48 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.90 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.01 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 9.11 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 8.33 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 12.70 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 6.32 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 6.32 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 3.29 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 2.39 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 5.40 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 6.17 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 5.84 | MC |