| SRR4457249 | 2nd_leaf | DAH4 | 2.79 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 3.20 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 3.03 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 4.23 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 2.38 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 2.53 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 3.24 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 4.68 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 0.68 | MC |
| SRR5560727 | caryopsis | wild_type | 1.07 | MC |
| SRR5560729 | caryopsis | wild_type | 0.51 | MC |
| SRR976168 | flag_leaf | wild_type | 3.14 | MC |
| SRR4457240 | flag_leaf | DAH28 | 3.72 | MC |
| SRR4457241 | flag_leaf | DAH28 | 2.71 | MC |
| SRR4457242 | flag_leaf | DAH28 | 2.38 | MC |
| SRR4457246 | flag_leaf | DAH44 | 1.77 | MC |
| SRR4457247 | flag_leaf | DAH44 | 1.51 | MC |
| SRR4457248 | flag_leaf | DAH44 | 0.88 | MC |
| SRR8060835 | leaf | wild_type | 0.60 | MC |
| SRR8060836 | leaf | wild_type | 0.66 | MC |
| SRR8060837 | leaf | wild_type | 0.45 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 2.48 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 3.68 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 1.39 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 0.90 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.53 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.64 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.56 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.40 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.81 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.35 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.18 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 0.51 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.35 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.49 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.41 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.69 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.46 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.30 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.56 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.52 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.38 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.99 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 1.32 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.39 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 1.41 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 1.30 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 1.41 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 1.30 | MC |
| SRR1761530 | leaf | control | 1.41 | MC |
| SRR1761531 | leaf | control | 1.30 | MC |
| SRR504365 | leaf | wt | 0.48 | MC |
| SRR6417967 | leaf | H2O_control | 0.59 | MC |
| SRR6417968 | leaf | H2O_control | 0.42 | MC |
| SRR6417969 | leaf | H2O_control | 1.09 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 3.15 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 1.64 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 1.83 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 0.68 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 1.54 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.82 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.25 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.74 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.45 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.52 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.32 | MC |
| SRR1213692 | leaf | wt | 0.55 | MC |
| SRR1213693 | leaf | wt | 1.24 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 0.36 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 0.97 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 1.05 | MC |
| SRR6502088 | leaf | control | 2.25 | MC |
| SRR6502089 | leaf | control | 1.59 | MC |
| SRR6502090 | leaf | control | 1.45 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 1.10 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 1.63 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 1.69 | MC |
| SRR6502100 | leaf | control | 2.69 | MC |
| SRR6502101 | leaf | control | 1.26 | MC |
| SRR6502102 | leaf | control | 1.90 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 2.42 | MC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 1.28 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 1.42 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 2.63 | MC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 3.50 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 3.39 | MC |
| SRR6168981 | leaf | none (control) | 0.32 | MC |
| SRR8582889 | panicle | AM | 0.28 | MC |
| SRR8582890 | panicle | AM | 1.36 | MC |
| SRR8582891 | panicle | PM | 1.64 | MC |
| SRR8582892 | panicle | PM | 0.89 | MC |
| SRR8582893 | panicle | PM | 0.92 | MC |
| SRR5110429 | panicle | Dawn | 2.83 | MC |
| SRR5110431 | panicle | Dawn | 3.70 | MC |
| SRR5110432 | panicle | Dawn | 1.68 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 2.65 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 1.56 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 1.95 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 1.69 | MC |
| SRR5110437 | panicle | Dawn + 7h | 0.93 | MC |
| SRR5110438 | panicle | Dawn + 7h | 1.74 | MC |
| SRR5110440 | panicle | Dawn + 7h | 1.03 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 1.24 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 1.02 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 0.98 | MC |
| SRR5110445 | panicle | Dusk | 0.77 | MC |
| SRR5110446 | panicle | Dusk | 1.59 | MC |
| SRR5110447 | panicle | Dusk | 1.51 | MC |
| SRR5110448 | panicle | Dusk | 2.02 | MC |
| SRR5110449 | panicle | Dawn + 14h | 4.92 | MC |
| SRR5110450 | panicle | Dawn + 14h | 2.31 | MC |
| SRR5110451 | panicle | Dawn + 14h | 1.94 | MC |
| SRR5110452 | panicle | Dawn + 14h | 2.09 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 2.44 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 2.86 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 3.46 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 4.71 | MC |
| SRR5110457 | panicle | Dawn + 21h | 0.94 | MC |
| SRR5110459 | panicle | Dawn + 21h | 2.29 | MC |
| SRR5110460 | panicle | Dawn + 21h | 3.96 | MC |
| SRR1633185 | panicle | WT | 0.35 | MC |
| SRR1213695 | root | wt | 0.56 | MC |
| SRR6441554 | seedling | wild_type | 0.36 | MC |
| SRR6441555 | seedling | wild_type | 1.01 | MC |
| SRR2154086 | seedling | wt | 0.77 | MC |
| SRR2154085 | seedling | wt | 0.46 | MC |
| SRR2154087 | seedling | wt | 1.26 | MC |
| SRR3098742 | seedling | wt | 2.84 | MC |
| SRR2857719 | seedling | drought_stress_0h | 1.78 | MC |
| SRR2857720 | seedling | drought_stress_1h | 0.83 | MC |
| SRR1944583 | seedling | no_treatment | 0.66 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.49 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 7.49 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.23 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 2.89 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.39 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.50 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.94 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.41 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 1.21 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 1.67 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 1.29 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 2.59 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 3.87 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 4.12 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 1.38 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 2.99 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 2.16 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.90 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.52 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.48 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.70 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.53 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.78 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.49 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 2.45 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.76 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.84 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.68 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.38 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.67 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.25 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 3.00 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 2.33 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 2.23 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 1.41 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 0.89 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 1.54 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 0.58 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.79 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 0.45 | MC |