| SRR4457251 | 2nd_leaf | DAH4 | 0.24 | MC |
| SRR3745126 | anther | wt | 0.50 | MC |
| SRR3745127 | anther | wt | 0.92 | MC |
| SRR358795 | callus | wt | 1.80 | MC |
| SRR358796 | callus | wt | 3.42 | MC |
| SRR358797 | callus | wt | 3.43 | MC |
| SRR6320498 | carpel | wt | 1.68 | MC |
| SRR5560727 | caryopsis | wild_type | 2.04 | MC |
| SRR5560728 | caryopsis | wild_type | 1.72 | MC |
| SRR5560729 | caryopsis | wild_type | 1.81 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.68 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 1.08 | MC |
| SRR7265401 | coleoptile | 2dA | 0.39 | MC |
| SRR7265402 | coleoptile | 2dA | 0.49 | MC |
| SRR7265403 | coleoptile | 2dN | 0.96 | MC |
| SRR7265404 | coleoptile | 2dN | 1.46 | MC |
| SRR7265405 | coleoptile | 2dN | 0.98 | MC |
| SRR7265406 | coleoptile | 3dA | 0.63 | MC |
| SRR7265409 | coleoptile | 3dN | 0.68 | MC |
| SRR7265410 | coleoptile | 3dN | 0.91 | MC |
| SRR7265411 | coleoptile | 3dN | 0.93 | MC |
| SRR7265412 | coleoptile | 4dA | 0.79 | MC |
| SRR7265413 | coleoptile | 4dA | 0.63 | MC |
| SRR7265416 | coleoptile | 4dN | 0.90 | MC |
| SRR7265417 | coleoptile | 4dN | 2.21 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 1.58 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 1.26 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.76 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 0.68 | MC |
| SRR7265374 | embryo | dry seed 0 h | 0.57 | MC |
| SRR7265379 | embryo | 1hN | 0.31 | MC |
| SRR7265382 | embryo | 3hA | 0.85 | MC |
| SRR7265383 | embryo | 3hA | 1.04 | MC |
| SRR7265384 | embryo | 3hA | 0.83 | MC |
| SRR7265387 | embryo | 3hN | 0.44 | MC |
| SRR7265388 | embryo | 12hA | 1.07 | MC |
| SRR7265389 | embryo | 12hA | 2.11 | MC |
| SRR7265390 | embryo | 12hA | 1.03 | MC |
| SRR7265391 | embryo | 12hN | 2.56 | MC |
| SRR7265392 | embryo | 12hN | 1.45 | MC |
| SRR7265393 | embryo | 12hN | 2.02 | MC |
| SRR7265395 | embryo | 24hA | 0.91 | MC |
| SRR7265396 | embryo | 24hA | 1.51 | MC |
| SRR7265397 | embryo | 24hN | 1.42 | MC |
| SRR7265398 | embryo | 24hN | 2.96 | MC |
| SRR7265399 | embryo | 24hN | 2.68 | MC |
| SRR2338869 | endosprem | high_temperature | 0.82 | MC |
| SRR976168 | flag_leaf | wild_type | 0.89 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.25 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.70 | MC |
| SRR1213691 | flower | wt | 2.00 | MC |
| SRR8060835 | leaf | wild_type | 0.24 | MC |
| SRR8060836 | leaf | wild_type | 0.50 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.38 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.43 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.92 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.20 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.56 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.43 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.27 | MC |
| SRR504365 | leaf | wt | 0.22 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.20 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.77 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.62 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.25 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.27 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.47 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.59 | MC |
| SRR6168974 | leaf | none (control) | 0.89 | MC |
| SRR6168975 | leaf | none (control) | 4.58 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 0.42 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 0.82 | MC |
| SRR6168979 | leaf | none (control) | 0.47 | MC |
| SRR6168980 | leaf | none (control) | 1.08 | MC |
| SRR6168981 | leaf | none (control) | 0.85 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.63 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.47 | MC |
| SRR5110437 | panicle | Dawn + 7h | 0.57 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.53 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.32 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.31 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 3.00 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 1.86 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 3.10 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 2.83 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 5.25 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 4.99 | MC |
| SRR5126147 | root | "mock,1_day" | 0.81 | MC |
| SRR5126148 | root | "mock,1_day" | 0.67 | MC |
| SRR5126149 | root | "mock,1_day" | 0.83 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.39 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.49 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.61 | MC |
| SRR5126153 | root | "mock,7_days" | 0.62 | MC |
| SRR5126155 | root | "mock,7_days" | 0.72 | MC |
| SRR5126157 | root | "mock,7_days" | 0.95 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 1.13 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 2.57 | MC |
| SRR5126165 | root | "mock,14_days" | 0.83 | MC |
| SRR5126167 | root | "mock,14_days" | 0.60 | MC |
| SRR5126169 | root | "mock,14_days" | 0.42 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.90 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 1.24 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 1.62 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.38 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.28 | MC |
| SRR1213694 | root | wt | 0.40 | MC |
| SRR6502104 | root | 100 mM NaCl | 0.97 | MC |
| SRR6502105 | root | 100 mM NaCl | 1.12 | MC |
| SRR6502107 | root | control | 0.34 | MC |
| SRR1740431 | root_elongation_zone | wt | 0.52 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.49 | MC |
| SRR1740433 | root_elongation_zone | wt | 1.06 | MC |
| SRR2154086 | seedling | wt | 1.38 | MC |
| SRR2154083 | seedling | wt | 0.48 | MC |
| SRR2154084 | seedling | wt | 0.54 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.67 | MC |
| SRR2857720 | seedling | drought_stress_1h | 0.43 | MC |
| SRR2857721 | seedling | drought_stress_6h | 1.43 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.36 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 4.48 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 8.30 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 8.49 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.36 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.16 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.03 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 6.29 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.42 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.42 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.40 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 4.38 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 5.07 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 5.11 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 6.11 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 4.37 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 4.53 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 4.00 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 4.53 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 4.78 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 3.62 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 3.04 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 4.44 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 4.42 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 6.64 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 6.17 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 5.64 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 7.39 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 5.74 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 4.05 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 5.19 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 4.79 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 5.58 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 10.37 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 2.03 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 0.96 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 4.40 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 3.21 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 2.57 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.66 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 0.58 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 0.50 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 1.33 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 0.49 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.66 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 0.99 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 0.42 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.40 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.60 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.81 | MC |