| SRR3745126 | anther | wt | 0.46 | MC |
| SRR6320473 | carpel | wt | 2.26 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.36 | MC |
| SRR7265400 | coleoptile | 2dA | 1.62 | MC |
| SRR7265401 | coleoptile | 2dA | 1.56 | MC |
| SRR7265402 | coleoptile | 2dA | 1.77 | MC |
| SRR7265406 | coleoptile | 3dA | 0.36 | MC |
| SRR7265407 | coleoptile | 3dA | 0.29 | MC |
| SRR7265412 | coleoptile | 4dA | 0.46 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 1.26 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 1.01 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 1.23 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 1.06 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 0.48 | MC |
| SRR7265373 | embryo | dry seed 0 h | 3.51 | MC |
| SRR7265374 | embryo | dry seed 0 h | 3.32 | MC |
| SRR7265375 | embryo | dry seed 0 h | 1.11 | MC |
| SRR7265376 | embryo | 1hA | 3.17 | MC |
| SRR7265377 | embryo | 1hA | 2.68 | MC |
| SRR7265379 | embryo | 1hN | 2.31 | MC |
| SRR7265380 | embryo | 1hN | 2.35 | MC |
| SRR7265381 | embryo | 1hN | 2.37 | MC |
| SRR7265382 | embryo | 3hA | 2.89 | MC |
| SRR7265383 | embryo | 3hA | 3.91 | MC |
| SRR7265384 | embryo | 3hA | 3.24 | MC |
| SRR7265385 | embryo | 3hN | 3.34 | MC |
| SRR7265386 | embryo | 3hN | 2.02 | MC |
| SRR7265387 | embryo | 3hN | 2.39 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.85 | MC |
| SRR1213691 | flower | wt | 0.62 | MC |
| SRR8060835 | leaf | wild_type | 0.78 | MC |
| SRR8060836 | leaf | wild_type | 0.70 | MC |
| SRR8060837 | leaf | wild_type | 0.63 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.60 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.60 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 1.82 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 1.48 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.24 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 0.37 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.22 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.30 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.36 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.53 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.50 | MC |
| SRR5856927 | leaf | control | 0.89 | MC |
| SRR5856929 | leaf | control | 1.77 | MC |
| SRR5856930 | leaf | salt | 1.02 | MC |
| SRR5856931 | leaf | salt | 0.98 | MC |
| SRR5856932 | leaf | salt | 0.76 | MC |
| SRR5856938 | leaf | salt | 1.76 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 5.22 | MC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 2.81 | MC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 1.88 | MC |
| SRR6053395 | leaf | gibberellic acid (GA) | 3.09 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 4.10 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 2.31 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 2.66 | MC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 3.69 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 3.77 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 0.93 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.48 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.38 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.51 | MC |
| SRR8582888 | panicle | AM | 1.43 | MC |
| SRR8582889 | panicle | AM | 0.90 | MC |
| SRR8582890 | panicle | AM | 0.79 | MC |
| SRR5110429 | panicle | Dawn | 0.51 | MC |
| SRR5110431 | panicle | Dawn | 0.62 | MC |
| SRR4947496 | root | control | 0.98 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 0.33 | MC |
| SRR5110446 | panicle | Dusk | 0.77 | MC |
| SRR5110447 | panicle | Dusk | 0.50 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.45 | MC |
| SRR1633185 | panicle | WT | 4.98 | MC |
| SRR5126147 | root | "mock,1_day" | 1.44 | MC |
| SRR5126148 | root | "mock,1_day" | 1.29 | MC |
| SRR5126149 | root | "mock,1_day" | 1.45 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 2.99 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 3.64 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 3.85 | MC |
| SRR5126153 | root | "mock,7_days" | 2.10 | MC |
| SRR5126155 | root | "mock,7_days" | 3.28 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 1.49 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 1.99 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 2.60 | MC |
| SRR5126165 | root | "mock,14_days" | 2.00 | MC |
| SRR5126169 | root | "mock,14_days" | 0.95 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 1.17 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 2.08 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.36 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 2.23 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 1.15 | MC |
| SRR1213694 | root | wt | 1.65 | MC |
| SRR4947480 | root | control | 1.04 | MC |
| SRR4947481 | root | control | 0.96 | MC |
| SRR4947482 | root | Al | 0.89 | MC |
| SRR4947484 | root | Al | 0.94 | MC |
| SRR4947485 | root | Al | 1.78 | MC |
| SRR4947488 | root | control | 1.47 | MC |
| SRR4947489 | root | control | 0.99 | MC |
| SRR4947490 | root | Al | 0.57 | MC |
| SRR4947491 | root | Al | 0.57 | MC |
| SRR4947492 | root | Al | 1.25 | MC |
| SRR4947493 | root | Al | 0.76 | MC |
| SRR4947497 | root | control | 1.27 | MC |
| SRR4947500 | root | Al | 0.79 | MC |
| SRR4947501 | root | Al | 0.74 | MC |
| SRR4947504 | root | control | 0.55 | MC |
| SRR4947505 | root | control | 1.19 | MC |
| SRR4947506 | root | Al | 0.56 | MC |
| SRR4947508 | root | Al | 1.05 | MC |
| SRR4947509 | root | Al | 1.01 | MC |
| SRR6502091 | root | 100 mM NaCl | 1.15 | MC |
| SRR6502092 | root | 100 mM NaCl | 1.09 | MC |
| SRR6502093 | root | 100 mM NaCl | 0.72 | MC |
| SRR6502094 | root | control | 1.38 | MC |
| SRR6502095 | root | control | 1.27 | MC |
| SRR6502096 | root | control | 1.07 | MC |
| SRR6502103 | root | 100 mM NaCl | 1.02 | MC |
| SRR6502104 | root | 100 mM NaCl | 0.84 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.89 | MC |
| SRR6502106 | root | control | 2.09 | MC |
| SRR6502107 | root | control | 1.66 | MC |
| SRR6502108 | root | control | 3.03 | MC |
| SRR1740434 | root_differentiation_zone | wt | 3.13 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.22 | MC |
| SRR6441554 | seedling | wild_type | 0.32 | MC |
| SRR6441555 | seedling | wild_type | 0.23 | MC |
| SRR2154086 | seedling | wt | 0.47 | MC |
| SRR2154082 | seedling | wt | 1.54 | MC |
| SRR2154083 | seedling | wt | 1.03 | MC |
| SRR2154084 | seedling | wt | 0.85 | MC |
| SRR3098741 | seedling | wt | 0.20 | MC |
| SRR3098743 | seedling | wt | 0.15 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.60 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 4.03 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 7.35 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 9.68 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.39 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.81 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.82 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.24 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.64 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.26 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.39 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 2.53 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 2.91 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 3.32 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 1.05 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 1.09 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 0.94 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.57 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.72 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 0.70 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 0.46 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 0.39 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.58 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 0.87 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.45 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.40 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.30 | MC |