| SRR4457263 | 2nd_leaf | DAH36 | 4.81 | MC |
| SRR3745126 | anther | wt | 0.77 | MC |
| SRR3745127 | anther | wt | 0.99 | MC |
| SRR6320473 | carpel | wt | 1.46 | MC |
| SRR6320498 | carpel | wt | 1.65 | MC |
| SRR5560728 | caryopsis | wild_type | 4.77 | MC |
| SRR5560729 | caryopsis | wild_type | 4.83 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 1.55 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 1.23 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 1.09 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.54 | MC |
| SRR7265406 | coleoptile | 3dA | 0.39 | MC |
| SRR7265407 | coleoptile | 3dA | 0.24 | MC |
| SRR7265413 | coleoptile | 4dA | 0.51 | MC |
| SRR7265414 | coleoptile | 4dA | 0.58 | MC |
| SRR7265415 | coleoptile | 4dN | 0.54 | MC |
| SRR7265417 | coleoptile | 4dN | 0.43 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 1.52 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.86 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.80 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 1.04 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.48 | MC |
| SRR7265374 | embryo | dry seed 0 h | 0.38 | MC |
| SRR7265376 | embryo | 1hA | 0.43 | MC |
| SRR7265377 | embryo | 1hA | 0.49 | MC |
| SRR7265378 | embryo | 1hA | 0.38 | MC |
| SRR7265379 | embryo | 1hN | 0.51 | MC |
| SRR7265380 | embryo | 1hN | 0.59 | MC |
| SRR7265381 | embryo | 1hN | 0.55 | MC |
| SRR7265386 | embryo | 3hN | 0.45 | MC |
| SRR7265387 | embryo | 3hN | 0.30 | MC |
| SRR2338867 | endosprem | control | 0.45 | MC |
| SRR2338869 | endosprem | high_temperature | 0.60 | MC |
| SRR976168 | flag_leaf | wild_type | 2.70 | MC |
| SRR1213690 | flower | wt(flower buds) | 2.54 | MC |
| SRR1213691 | flower | wt | 3.67 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 1.93 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 2.49 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 0.91 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 0.93 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 5.28 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 3.93 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 3.81 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 2.27 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.50 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 3.72 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 3.80 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 2.17 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 4.19 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 2.91 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 3.47 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 3.15 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 3.19 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 2.75 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 4.08 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 1.76 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 3.41 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 3.46 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 3.55 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 4.34 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 4.34 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 2.86 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 3.96 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 4.30 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.66 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.94 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 3.12 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 3.37 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 2.48 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 4.32 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.75 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 2.71 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 4.38 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 3.83 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 2.86 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 1.84 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 2.66 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 1.56 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 2.86 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 1.84 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 2.66 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 1.56 | MC |
| SRR1761528 | leaf | drought | 2.86 | MC |
| SRR1761529 | leaf | drought | 1.84 | MC |
| SRR1761530 | leaf | control | 2.66 | MC |
| SRR1761531 | leaf | control | 1.56 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.84 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.74 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.35 | MC |
| SRR6417967 | leaf | H2O_control | 2.32 | MC |
| SRR6417968 | leaf | H2O_control | 2.24 | MC |
| SRR6417969 | leaf | H2O_control | 2.87 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 1.91 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 2.51 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 1.95 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 2.31 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 3.31 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 2.46 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 2.16 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 4.16 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 3.34 | MC |
| SRR5856927 | leaf | control | 1.11 | MC |
| SRR5856928 | leaf | control | 0.80 | MC |
| SRR5856929 | leaf | control | 1.22 | MC |
| SRR5856930 | leaf | salt | 0.54 | MC |
| SRR5856931 | leaf | salt | 0.50 | MC |
| SRR5856932 | leaf | salt | 0.59 | MC |
| SRR5856933 | leaf | control | 0.55 | MC |
| SRR5856934 | leaf | control | 0.49 | MC |
| SRR5856935 | leaf | control | 0.57 | MC |
| SRR5856936 | leaf | salt | 0.47 | MC |
| SRR5856937 | leaf | salt | 0.51 | MC |
| SRR5856938 | leaf | salt | 0.36 | MC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 1.49 | MC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 2.17 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 0.55 | MC |
| SRR6168980 | leaf | none (control) | 1.36 | MC |
| SRR8582888 | panicle | AM | 2.55 | MC |
| SRR8582890 | panicle | AM | 1.65 | MC |
| SRR5110429 | panicle | Dawn | 2.45 | MC |
| SRR5110430 | panicle | Dawn | 3.61 | MC |
| SRR5110431 | panicle | Dawn | 2.16 | MC |
| SRR5110432 | panicle | Dawn | 2.35 | MC |
| SRR4947496 | root | control | 1.15 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 3.30 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 2.53 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 1.98 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 1.75 | MC |
| SRR5110437 | panicle | Dawn + 7h | 2.47 | MC |
| SRR5110438 | panicle | Dawn + 7h | 2.07 | MC |
| SRR5110439 | panicle | Dawn + 7h | 3.30 | MC |
| SRR5110440 | panicle | Dawn + 7h | 3.42 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 3.88 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 3.74 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 3.85 | MC |
| SRR5110445 | panicle | Dusk | 3.69 | MC |
| SRR5110449 | panicle | Dawn + 14h | 5.45 | MC |
| SRR5110450 | panicle | Dawn + 14h | 3.47 | MC |
| SRR5110457 | panicle | Dawn + 21h | 2.77 | MC |
| SRR5110458 | panicle | Dawn + 21h | 1.88 | MC |
| SRR5110459 | panicle | Dawn + 21h | 1.71 | MC |
| SRR5110460 | panicle | Dawn + 21h | 2.27 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 1.08 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.40 | MC |
| SRR1633185 | panicle | WT | 0.63 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.58 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.68 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 1.46 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 1.50 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 2.74 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 3.85 | MC |
| SRR5126149 | root | "mock,1_day" | 0.45 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.48 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.58 | MC |
| SRR5126153 | root | "mock,7_days" | 0.38 | MC |
| SRR5126155 | root | "mock,7_days" | 0.79 | MC |
| SRR5126157 | root | "mock,7_days" | 0.86 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.87 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.90 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.84 | MC |
| SRR5126165 | root | "mock,14_days" | 0.67 | MC |
| SRR5126167 | root | "mock,14_days" | 0.67 | MC |
| SRR5126169 | root | "mock,14_days" | 0.97 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.64 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 1.30 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 1.05 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.82 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 1.43 | MC |
| SRR1213694 | root | wt | 1.02 | MC |
| SRR4947480 | root | control | 1.49 | MC |
| SRR4947481 | root | control | 1.88 | MC |
| SRR4947484 | root | Al | 0.58 | MC |
| SRR4947485 | root | Al | 1.15 | MC |
| SRR4947488 | root | control | 1.42 | MC |
| SRR4947489 | root | control | 1.16 | MC |
| SRR4947492 | root | Al | 0.65 | MC |
| SRR4947493 | root | Al | 1.14 | MC |
| SRR4947497 | root | control | 0.85 | MC |
| SRR4947500 | root | Al | 0.61 | MC |
| SRR4947501 | root | Al | 0.87 | MC |
| SRR4947504 | root | control | 0.76 | MC |
| SRR4947505 | root | control | 0.66 | MC |
| SRR4947508 | root | Al | 1.20 | MC |
| SRR4947509 | root | Al | 1.25 | MC |
| SRR6502091 | root | 100 mM NaCl | 1.38 | MC |
| SRR6502092 | root | 100 mM NaCl | 2.73 | MC |
| SRR6502093 | root | 100 mM NaCl | 1.65 | MC |
| SRR6502094 | root | control | 2.58 | MC |
| SRR6502095 | root | control | 1.32 | MC |
| SRR6502096 | root | control | 1.32 | MC |
| SRR6502103 | root | 100 mM NaCl | 1.35 | MC |
| SRR6502104 | root | 100 mM NaCl | 1.34 | MC |
| SRR6502105 | root | 100 mM NaCl | 1.56 | MC |
| SRR6502106 | root | control | 1.40 | MC |
| SRR6502107 | root | control | 1.04 | MC |
| SRR6502108 | root | control | 0.76 | MC |
| SRR1740434 | root_differentiation_zone | wt | 0.36 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.31 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.20 | MC |
| SRR2154086 | seedling | wt | 4.03 | MC |
| SRR2154082 | seedling | wt | 2.22 | MC |
| SRR2154085 | seedling | wt | 2.02 | MC |
| SRR2154087 | seedling | wt | 2.59 | MC |
| SRR2857719 | seedling | drought_stress_0h | 1.16 | MC |
| SRR2857720 | seedling | drought_stress_1h | 1.81 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.36 | MC |
| SRR1944583 | seedling | no_treatment | 4.48 | MC |
| SRR358791 | seedling | wt | 6.40 | MC |
| SRR358792 | seedling | wt | 5.44 | MC |
| SRR358793 | seedling | wt | 2.98 | MC |
| SRR358794 | seedling | wt | 2.52 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.92 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 4.41 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 12.78 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 8.45 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.09 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 2.18 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 2.64 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 1.94 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 2.56 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 2.60 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 2.08 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 2.21 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 2.07 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 1.69 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 1.10 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 2.05 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 2.31 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 2.37 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 2.72 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 2.41 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 1.70 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 1.69 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 1.35 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 1.42 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 1.20 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 1.00 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 1.49 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 1.44 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 1.24 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 1.85 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 1.54 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 1.49 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 1.16 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 1.76 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 1.69 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 2.00 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 1.72 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 1.78 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 2.16 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 2.32 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 2.54 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 2.06 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 2.26 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 3.79 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 2.45 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 3.09 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 2.69 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 2.56 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 2.88 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 2.50 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 3.11 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 3.59 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 3.63 | MC |