| SRR4457266 | 2nd_leaf | DAH44 | 0.73 | MC |
| SRR6320498 | carpel | wt | 1.43 | MC |
| SRR5560728 | caryopsis | wild_type | 0.47 | MC |
| SRR5560729 | caryopsis | wild_type | 0.96 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 1.89 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 2.65 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 1.34 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 2.07 | MC |
| SRR7265403 | coleoptile | 2dN | 0.69 | MC |
| SRR7265404 | coleoptile | 2dN | 0.33 | MC |
| SRR7265405 | coleoptile | 2dN | 0.30 | MC |
| SRR7265406 | coleoptile | 3dA | 0.32 | MC |
| SRR7265407 | coleoptile | 3dA | 0.58 | MC |
| SRR7265409 | coleoptile | 3dN | 0.80 | MC |
| SRR7265410 | coleoptile | 3dN | 1.76 | MC |
| SRR7265411 | coleoptile | 3dN | 2.09 | MC |
| SRR7265415 | coleoptile | 4dN | 2.53 | MC |
| SRR7265416 | coleoptile | 4dN | 1.63 | MC |
| SRR7265417 | coleoptile | 4dN | 0.87 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 1.00 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 0.84 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.48 | MC |
| SRR7265399 | embryo | 24hN | 0.59 | MC |
| SRR4457235 | flag_leaf | DAH12 | 0.33 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.31 | MC |
| SRR4457240 | flag_leaf | DAH28 | 0.70 | MC |
| SRR4457244 | flag_leaf | DAH36 | 0.69 | MC |
| SRR4457245 | flag_leaf | DAH36 | 1.09 | MC |
| SRR4457246 | flag_leaf | DAH44 | 1.27 | MC |
| SRR4457247 | flag_leaf | DAH44 | 1.60 | MC |
| SRR1213690 | flower | wt(flower buds) | 2.39 | MC |
| SRR8060836 | leaf | wild_type | 0.45 | MC |
| SRR8060837 | leaf | wild_type | 0.30 | MC |
| SRR8240824 | leaf | wild_type | 2.12 | MC |
| SRR8240825 | leaf | wild_type | 1.47 | MC |
| SRR8240818 | leaf | wild_type | 0.78 | MC |
| SRR8240819 | leaf | wild_type | 0.49 | MC |
| SRR8240820 | leaf | wild_type | 0.79 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 2.34 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 2.15 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 3.85 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.37 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.83 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.17 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.28 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.77 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.45 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.19 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.74 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.69 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.62 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 1.02 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 0.84 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.70 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 0.63 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 0.63 | MC |
| SRR1761530 | leaf | control | 0.63 | MC |
| SRR504365 | leaf | wt | 0.27 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.58 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.36 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 0.34 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.44 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.34 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.40 | MC |
| SRR8611900 | leaf | Non-inoculated | 1.05 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.85 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.63 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.72 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.60 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.54 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 1.54 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 1.52 | MC |
| SRR1213692 | leaf | wt | 0.50 | MC |
| SRR6502090 | leaf | control | 1.07 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 0.99 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 1.14 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 0.92 | MC |
| SRR6502100 | leaf | control | 1.65 | MC |
| SRR6502101 | leaf | control | 1.12 | MC |
| SRR6502102 | leaf | control | 0.86 | MC |
| SRR5856927 | leaf | control | 0.41 | MC |
| SRR5856931 | leaf | salt | 0.28 | MC |
| SRR5856934 | leaf | control | 0.35 | MC |
| SRR5856935 | leaf | control | 0.35 | MC |
| SRR5856937 | leaf | salt | 0.14 | MC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 1.83 | MC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 2.42 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 1.60 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 3.14 | MC |
| SRR6168980 | leaf | none (control) | 0.17 | MC |
| SRR6168981 | leaf | none (control) | 0.41 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.37 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.49 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.55 | MC |
| SRR8582888 | panicle | AM | 1.84 | MC |
| SRR8582889 | panicle | AM | 1.51 | MC |
| SRR8582890 | panicle | AM | 0.87 | MC |
| SRR8582891 | panicle | PM | 2.96 | MC |
| SRR8582892 | panicle | PM | 2.29 | MC |
| SRR8582893 | panicle | PM | 2.00 | MC |
| SRR5110429 | panicle | Dawn | 0.50 | MC |
| SRR5110430 | panicle | Dawn | 4.16 | MC |
| SRR5110431 | panicle | Dawn | 3.28 | MC |
| SRR5110432 | panicle | Dawn | 0.53 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 1.66 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 2.35 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 0.84 | MC |
| SRR5110437 | panicle | Dawn + 7h | 0.78 | MC |
| SRR5110438 | panicle | Dawn + 7h | 3.15 | MC |
| SRR5110439 | panicle | Dawn + 7h | 5.32 | MC |
| SRR5110440 | panicle | Dawn + 7h | 2.58 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 3.42 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 3.43 | MC |
| SRR5110447 | panicle | Dusk | 1.44 | MC |
| SRR5110448 | panicle | Dusk | 0.77 | MC |
| SRR5110450 | panicle | Dawn + 14h | 2.80 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 0.93 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 0.62 | MC |
| SRR5110457 | panicle | Dawn + 21h | 0.82 | MC |
| SRR5110458 | panicle | Dawn + 21h | 1.89 | MC |
| SRR5110460 | panicle | Dawn + 21h | 3.28 | MC |
| SRR5126147 | root | "mock,1_day" | 0.35 | MC |
| SRR5126148 | root | "mock,1_day" | 0.66 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.61 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.54 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 1.09 | MC |
| SRR5126155 | root | "mock,7_days" | 0.49 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.41 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.35 | MC |
| SRR1213695 | root | wt | 0.48 | MC |
| SRR4947480 | root | control | 0.62 | MC |
| SRR4947491 | root | Al | 0.71 | MC |
| SRR4947502 | root | control | 0.68 | MC |
| SRR4947509 | root | Al | 0.59 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.55 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.36 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.34 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.30 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.51 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.30 | MC |
| SRR1740428 | root_meristematic_zone | wt | 0.71 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.50 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.80 | MC |
| SRR6441554 | seedling | wild_type | 2.93 | MC |
| SRR6441555 | seedling | wild_type | 1.48 | MC |
| SRR2154086 | seedling | wt | 2.76 | MC |
| SRR2154082 | seedling | wt | 0.50 | MC |
| SRR2154083 | seedling | wt | 0.68 | MC |
| SRR2154084 | seedling | wt | 1.94 | MC |
| SRR2154085 | seedling | wt | 2.43 | MC |
| SRR2154087 | seedling | wt | 1.80 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.82 | MC |
| SRR2857720 | seedling | drought_stress_1h | 0.85 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.46 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 2.04 | MC |
| SRR1944583 | seedling | no_treatment | 0.56 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 3.09 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.65 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 4.01 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 11.88 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 9.29 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.26 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 6.01 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.44 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.09 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.82 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.24 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.38 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.34 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 0.31 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 1.52 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 2.54 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.52 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.74 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.96 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.18 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 2.89 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.70 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 2.36 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 2.75 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.91 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 1.49 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 2.78 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.21 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.09 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.18 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.54 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 0.92 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 0.94 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 1.17 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 0.57 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 0.50 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 0.71 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 0.93 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 0.55 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 0.68 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.68 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 1.06 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 1.94 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 1.50 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 3.60 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 2.31 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 2.79 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 1.22 | MC |