| SRR4457249 | 2nd_leaf | DAH4 | 1.81 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 1.26 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 1.72 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.40 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.44 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 1.61 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 0.54 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 0.87 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.74 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 0.58 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 1.64 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 1.75 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 0.87 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 0.90 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 0.72 | MC |
| SRR358795 | callus | wt | 3.07 | MC |
| SRR358796 | callus | wt | 1.81 | MC |
| SRR358797 | callus | wt | 2.23 | MC |
| SRR358798 | callus | wt | 2.50 | MC |
| SRR6320473 | carpel | wt | 2.78 | MC |
| SRR5560728 | caryopsis | wild_type | 4.05 | MC |
| SRR5560729 | caryopsis | wild_type | 2.44 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.71 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 1.43 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.46 | MC |
| SRR4947495 | root | control | 0.96 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.64 | MC |
| SRR7265402 | coleoptile | 2dA | 0.38 | MC |
| SRR7265414 | coleoptile | 4dA | 0.56 | MC |
| SRR7265417 | coleoptile | 4dN | 0.66 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 0.48 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.69 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 0.39 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 0.60 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 0.38 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 0.51 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.89 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.56 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 0.37 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 0.39 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.70 | MC |
| SRR7265374 | embryo | dry seed 0 h | 0.71 | MC |
| SRR7265377 | embryo | 1hA | 0.50 | MC |
| SRR7265378 | embryo | 1hA | 0.50 | MC |
| SRR7265379 | embryo | 1hN | 0.38 | MC |
| SRR7265381 | embryo | 1hN | 0.76 | MC |
| SRR7265385 | embryo | 3hN | 0.41 | MC |
| SRR7265386 | embryo | 3hN | 0.33 | MC |
| SRR7265387 | embryo | 3hN | 0.67 | MC |
| SRR7265388 | embryo | 12hA | 0.50 | MC |
| SRR7265389 | embryo | 12hA | 0.46 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.28 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.37 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.32 | MC |
| SRR4457241 | flag_leaf | DAH28 | 0.45 | MC |
| SRR4457244 | flag_leaf | DAH36 | 0.54 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.30 | MC |
| SRR4457246 | flag_leaf | DAH44 | 0.64 | MC |
| SRR4457247 | flag_leaf | DAH44 | 1.57 | MC |
| SRR1213690 | flower | wt(flower buds) | 2.71 | MC |
| SRR1213691 | flower | wt | 0.95 | MC |
| SRR8240824 | leaf | wild_type | 0.95 | MC |
| SRR8240825 | leaf | wild_type | 0.79 | MC |
| SRR8240826 | leaf | wild_type | 0.27 | MC |
| SRR8240818 | leaf | wild_type | 0.94 | MC |
| SRR8240819 | leaf | wild_type | 0.39 | MC |
| SRR8240820 | leaf | wild_type | 0.52 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 1.02 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.68 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 1.18 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 5.28 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 5.40 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 3.74 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 6.33 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 4.67 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 4.00 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 4.35 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 9.05 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 6.33 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 4.81 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 4.48 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 2.24 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 1.63 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 1.76 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 2.24 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 1.63 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 1.76 | MC |
| SRR1761528 | leaf | drought | 2.24 | MC |
| SRR1761529 | leaf | drought | 1.63 | MC |
| SRR1761531 | leaf | control | 1.76 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.74 | MC |
| SRR6417968 | leaf | H2O_control | 0.54 | MC |
| SRR6417969 | leaf | H2O_control | 0.90 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 0.86 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 0.78 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 0.29 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 0.76 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.49 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.82 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 0.66 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 2.25 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 3.32 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 1.85 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 3.22 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 3.09 | MC |
| SRR6502088 | leaf | control | 1.76 | MC |
| SRR6502089 | leaf | control | 1.59 | MC |
| SRR6502090 | leaf | control | 2.05 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 1.98 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 1.48 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 2.75 | MC |
| SRR6502100 | leaf | control | 2.38 | MC |
| SRR6502101 | leaf | control | 1.69 | MC |
| SRR6502102 | leaf | control | 2.57 | MC |
| SRR6053395 | leaf | gibberellic acid (GA) | 7.10 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 4.81 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 6.15 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 4.34 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 2.51 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 2.42 | MC |
| SRR6168980 | leaf | none (control) | 1.49 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 2.11 | MC |
| SRR8582888 | panicle | AM | 0.65 | MC |
| SRR8582889 | panicle | AM | 0.20 | MC |
| SRR8582890 | panicle | AM | 0.61 | MC |
| SRR5110429 | panicle | Dawn | 0.39 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 0.28 | MC |
| SRR5110437 | panicle | Dawn + 7h | 0.83 | MC |
| SRR5110440 | panicle | Dawn + 7h | 1.10 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 1.32 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 1.86 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 1.13 | MC |
| SRR5110445 | panicle | Dusk | 0.98 | MC |
| SRR5110446 | panicle | Dusk | 1.19 | MC |
| SRR5110447 | panicle | Dusk | 1.16 | MC |
| SRR5110448 | panicle | Dusk | 1.07 | MC |
| SRR5110450 | panicle | Dawn + 14h | 1.29 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.69 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.65 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 0.56 | MC |
| SRR5110457 | panicle | Dawn + 21h | 0.73 | MC |
| SRR5110459 | panicle | Dawn + 21h | 0.42 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.55 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.84 | MC |
| SRR1633182 | panicle | WT | 1.10 | MC |
| SRR1633185 | panicle | WT | 1.11 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.50 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.57 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.60 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.63 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 2.65 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 1.86 | MC |
| SRR5126148 | root | "mock,1_day" | 0.60 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.42 | MC |
| SRR5126153 | root | "mock,7_days" | 0.41 | MC |
| SRR5126155 | root | "mock,7_days" | 1.63 | MC |
| SRR5126157 | root | "mock,7_days" | 1.06 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.34 | MC |
| SRR5126169 | root | "mock,14_days" | 0.83 | MC |
| SRR1213694 | root | wt | 0.83 | MC |
| SRR4947482 | root | Al | 2.34 | MC |
| SRR4947483 | root | Al | 0.64 | MC |
| SRR4947499 | root | Al | 0.62 | MC |
| SRR4947503 | root | control | 1.09 | MC |
| SRR4947505 | root | control | 0.51 | MC |
| SRR4947506 | root | Al | 0.77 | MC |
| SRR6502107 | root | control | 0.82 | MC |
| SRR6441554 | seedling | wild_type | 1.84 | MC |
| SRR6441555 | seedling | wild_type | 2.30 | MC |
| SRR2154086 | seedling | wt | 3.48 | MC |
| SRR2154082 | seedling | wt | 2.45 | MC |
| SRR2154083 | seedling | wt | 2.98 | MC |
| SRR2154084 | seedling | wt | 2.28 | MC |
| SRR3098741 | seedling | wt | 1.66 | MC |
| SRR3098742 | seedling | wt | 0.86 | MC |
| SRR3098743 | seedling | wt | 1.44 | MC |
| SRR2857719 | seedling | drought_stress_0h | 1.13 | MC |
| SRR2857720 | seedling | drought_stress_1h | 0.35 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.70 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 1.12 | MC |
| SRR1944583 | seedling | no_treatment | 1.40 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 2.49 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.18 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.67 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.76 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 2.65 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 1.85 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 1.20 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 3.87 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 0.81 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 2.57 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 2.99 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 2.55 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 2.78 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 3.41 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 2.50 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 2.06 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 2.21 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 1.64 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 1.14 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 2.22 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 2.47 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 2.85 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 3.11 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 1.76 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 1.37 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 2.07 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 2.43 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 3.13 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 1.75 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 3.24 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 0.74 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 1.42 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 0.59 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 0.83 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 1.20 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 1.06 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 1.86 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 1.97 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 1.08 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 2.09 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 0.82 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 1.52 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 2.43 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 0.95 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 1.93 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 1.36 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 1.13 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 1.50 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 1.40 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.60 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.42 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.45 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.71 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 0.40 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 1.49 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 1.12 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 0.40 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 0.94 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 1.59 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 0.81 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 0.68 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 1.51 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 0.60 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.44 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.90 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.68 | MC |