| SRR6320473 | carpel | wt | 2.34 | MC |
| SRR6320498 | carpel | wt | 1.73 | MC |
| SRR5560727 | caryopsis | wild_type | 0.54 | MC |
| SRR5560728 | caryopsis | wild_type | 0.85 | MC |
| SRR5560729 | caryopsis | wild_type | 1.05 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 1.11 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 2.30 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 3.36 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 1.11 | MC |
| SRR7265400 | coleoptile | 2dA | 2.27 | MC |
| SRR7265401 | coleoptile | 2dA | 1.84 | MC |
| SRR7265402 | coleoptile | 2dA | 1.88 | MC |
| SRR7265403 | coleoptile | 2dN | 1.94 | MC |
| SRR7265404 | coleoptile | 2dN | 1.97 | MC |
| SRR7265405 | coleoptile | 2dN | 2.52 | MC |
| SRR7265407 | coleoptile | 3dA | 0.61 | MC |
| SRR7265408 | coleoptile | 3dA | 0.39 | MC |
| SRR7265409 | coleoptile | 3dN | 0.71 | MC |
| SRR7265410 | coleoptile | 3dN | 1.47 | MC |
| SRR7265411 | coleoptile | 3dN | 0.82 | MC |
| SRR7265413 | coleoptile | 4dA | 1.22 | MC |
| SRR7265415 | coleoptile | 4dN | 0.58 | MC |
| SRR7265416 | coleoptile | 4dN | 1.19 | MC |
| SRR7265417 | coleoptile | 4dN | 1.25 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 3.03 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.34 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.77 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 1.89 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 0.61 | MC |
| SRR7265388 | embryo | 12hA | 4.81 | MC |
| SRR7265389 | embryo | 12hA | 4.76 | MC |
| SRR7265391 | embryo | 12hN | 3.75 | MC |
| SRR7265392 | embryo | 12hN | 3.48 | MC |
| SRR7265393 | embryo | 12hN | 4.30 | MC |
| SRR7265394 | embryo | 24hA | 2.14 | MC |
| SRR7265395 | embryo | 24hA | 1.90 | MC |
| SRR7265396 | embryo | 24hA | 1.94 | MC |
| SRR7265397 | embryo | 24hN | 1.83 | MC |
| SRR7265398 | embryo | 24hN | 1.97 | MC |
| SRR7265399 | embryo | 24hN | 1.94 | MC |
| SRR1213690 | flower | wt(flower buds) | 1.97 | MC |
| SRR1213691 | flower | wt | 0.99 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 2.24 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 3.77 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 3.76 | MC |
| SRR504365 | leaf | wt | 0.43 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 0.37 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.49 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.32 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 1.07 | MC |
| SRR5856927 | leaf | control | 0.32 | MC |
| SRR5856928 | leaf | control | 0.24 | MC |
| SRR5856929 | leaf | control | 0.29 | MC |
| SRR5856933 | leaf | control | 0.78 | MC |
| SRR5856934 | leaf | control | 0.46 | MC |
| SRR5856935 | leaf | control | 0.67 | MC |
| SRR5856936 | leaf | salt | 0.21 | MC |
| SRR5856938 | leaf | salt | 0.16 | MC |
| SRR6168973 | leaf | none (control) | 2.82 | MC |
| SRR6168974 | leaf | none (control) | 1.76 | MC |
| SRR6168981 | leaf | none (control) | 1.53 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 1.75 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 2.76 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 0.37 | MC |
| SRR5110446 | panicle | Dusk | 0.37 | MC |
| SRR5110448 | panicle | Dusk | 1.38 | MC |
| SRR5110452 | panicle | Dawn + 14h | 0.78 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.44 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.50 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 1.89 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 1.71 | MC |
| SRR5126149 | root | "mock,1_day" | 3.32 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.71 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 1.34 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 1.12 | MC |
| SRR5126153 | root | "mock,7_days" | 2.17 | MC |
| SRR5126155 | root | "mock,7_days" | 3.90 | MC |
| SRR5126157 | root | "mock,7_days" | 2.52 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 4.85 | MC |
| SRR5126165 | root | "mock,14_days" | 2.39 | MC |
| SRR5126167 | root | "mock,14_days" | 1.91 | MC |
| SRR5126169 | root | "mock,14_days" | 2.46 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 3.33 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 4.27 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 1.14 | MC |
| SRR1213694 | root | wt | 1.85 | MC |
| SRR4947505 | root | control | 0.52 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.90 | MC |
| SRR6502093 | root | 100 mM NaCl | 0.81 | MC |
| SRR6502094 | root | control | 0.48 | MC |
| SRR6502103 | root | 100 mM NaCl | 0.86 | MC |
| SRR6502105 | root | 100 mM NaCl | 2.12 | MC |
| SRR6502107 | root | control | 0.61 | MC |
| SRR6502108 | root | control | 1.32 | MC |
| SRR1740434 | root_differentiation_zone | wt | 0.52 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.30 | MC |
| SRR6441555 | seedling | wild_type | 0.78 | MC |
| SRR2154082 | seedling | wt | 1.40 | MC |
| SRR2154083 | seedling | wt | 0.79 | MC |
| SRR2154085 | seedling | wt | 0.35 | MC |
| SRR2154087 | seedling | wt | 3.00 | MC |
| SRR3098742 | seedling | wt | 0.16 | MC |
| SRR3098743 | seedling | wt | 0.28 | MC |
| SRR2857719 | seedling | drought_stress_0h | 2.71 | MC |
| SRR2857720 | seedling | drought_stress_1h | 0.73 | MC |
| SRR2857721 | seedling | drought_stress_6h | 1.02 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 2.45 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 3.60 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 4.66 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 4.91 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 11.96 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 8.70 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.00 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 5.58 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.41 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.27 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.55 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.42 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.32 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.39 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.18 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.54 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.46 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.56 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 4.61 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 3.23 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 5.60 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 5.59 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 5.57 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 6.61 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 5.09 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 0.57 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 1.15 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 1.42 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 1.33 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 0.46 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 0.54 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.26 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.58 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.55 | MC |