| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.50 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 0.73 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.73 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.45 | MC |
| SRR7265400 | coleoptile | 2dA | 0.73 | MC |
| SRR7265401 | coleoptile | 2dA | 0.86 | MC |
| SRR7265402 | coleoptile | 2dA | 0.80 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.78 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 0.74 | MC |
| SRR7265388 | embryo | 12hA | 1.49 | MC |
| SRR7265389 | embryo | 12hA | 1.41 | MC |
| SRR7265390 | embryo | 12hA | 1.17 | MC |
| SRR7265394 | embryo | 24hA | 1.13 | MC |
| SRR7265395 | embryo | 24hA | 1.13 | MC |
| SRR7265396 | embryo | 24hA | 1.14 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.95 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.46 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 1.13 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 0.65 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.02 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.37 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.44 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.49 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.38 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.39 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 0.65 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.82 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.50 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.42 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.36 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.69 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.54 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 2.78 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 4.60 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 2.78 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 4.60 | MC |
| SRR1761528 | leaf | drought | 2.78 | MC |
| SRR1761529 | leaf | drought | 4.60 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 2.08 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 2.33 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 2.27 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 2.64 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 1.17 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 3.72 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 1.06 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.88 | MC |
| SRR6168979 | leaf | none (control) | 0.42 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.35 | MC |
| SRR1633182 | panicle | WT | 0.93 | MC |
| SRR1633185 | panicle | WT | 1.13 | MC |
| SRR5126147 | root | "mock,1_day" | 1.22 | MC |
| SRR5126148 | root | "mock,1_day" | 1.52 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 1.06 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.76 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 1.43 | MC |
| SRR5126153 | root | "mock,7_days" | 1.04 | MC |
| SRR5126155 | root | "mock,7_days" | 0.93 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.39 | MC |
| SRR5126165 | root | "mock,14_days" | 0.88 | MC |
| SRR5126167 | root | "mock,14_days" | 0.39 | MC |
| SRR5126169 | root | "mock,14_days" | 0.63 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.34 | MC |
| SRR4947487 | root | control | 0.52 | MC |
| SRR4947502 | root | control | 0.57 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.61 | MC |
| SRR6502092 | root | 100 mM NaCl | 0.70 | MC |
| SRR6502093 | root | 100 mM NaCl | 0.81 | MC |
| SRR6502094 | root | control | 0.63 | MC |
| SRR6502095 | root | control | 0.84 | MC |
| SRR6502096 | root | control | 0.58 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.46 | MC |
| SRR6502108 | root | control | 0.48 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.81 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.88 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.33 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.93 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.83 | MC |
| SRR2154086 | seedling | wt | 0.53 | MC |
| SRR2154082 | seedling | wt | 0.31 | MC |
| SRR2154083 | seedling | wt | 0.29 | MC |
| SRR2154085 | seedling | wt | 0.59 | MC |
| SRR2154087 | seedling | wt | 0.60 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.70 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.43 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 1.67 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 3.08 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 4.78 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 7.80 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 4.78 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 3.96 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.23 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.29 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.17 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.45 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.44 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.36 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.66 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.78 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.84 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 0.63 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 0.88 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 0.80 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 0.65 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 1.11 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 1.18 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 1.05 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 1.72 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 1.29 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 0.70 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 0.83 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 0.63 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 0.69 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 0.76 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 0.86 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 1.03 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 0.88 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 0.80 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 0.48 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.75 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.39 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.51 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.48 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.66 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.39 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 0.38 | MC |