| SRR4457254 | 2nd_leaf | DAH12 | 0.26 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.35 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.26 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 0.51 | MC |
| SRR3745125 | anther | wt | 4.95 | MC |
| SRR3745127 | anther | wt | 3.49 | MC |
| SRR5560727 | caryopsis | wild_type | 1.24 | MC |
| SRR5560728 | caryopsis | wild_type | 1.03 | MC |
| SRR5560729 | caryopsis | wild_type | 2.61 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 0.56 | MC |
| SRR7265400 | coleoptile | 2dA | 0.69 | MC |
| SRR7265401 | coleoptile | 2dA | 0.34 | MC |
| SRR7265407 | coleoptile | 3dA | 0.25 | MC |
| SRR7265408 | coleoptile | 3dA | 0.37 | MC |
| SRR7265414 | coleoptile | 4dA | 0.63 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 0.59 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.41 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.60 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 0.86 | MC |
| SRR7265373 | embryo | dry seed 0 h | 1.06 | MC |
| SRR7265374 | embryo | dry seed 0 h | 1.21 | MC |
| SRR7265378 | embryo | 1hA | 0.81 | MC |
| SRR7265379 | embryo | 1hN | 1.05 | MC |
| SRR7265381 | embryo | 1hN | 0.88 | MC |
| SRR7265382 | embryo | 3hA | 1.14 | MC |
| SRR7265383 | embryo | 3hA | 0.61 | MC |
| SRR7265384 | embryo | 3hA | 0.56 | MC |
| SRR7265385 | embryo | 3hN | 0.88 | MC |
| SRR7265386 | embryo | 3hN | 0.44 | MC |
| SRR7265387 | embryo | 3hN | 0.58 | MC |
| SRR7265388 | embryo | 12hA | 0.59 | MC |
| SRR7265389 | embryo | 12hA | 0.53 | MC |
| SRR7265390 | embryo | 12hA | 0.72 | MC |
| SRR1213690 | flower | wt(flower buds) | 1.90 | MC |
| SRR1213691 | flower | wt | 2.07 | MC |
| SRR8240824 | leaf | wild_type | 0.46 | MC |
| SRR8240826 | leaf | wild_type | 0.36 | MC |
| SRR8240819 | leaf | wild_type | 0.43 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.39 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.58 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 1.21 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.47 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.54 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.47 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.25 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 0.48 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.38 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.18 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.23 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.33 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.60 | MC |
| SRR504365 | leaf | wt | 0.33 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 0.26 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.35 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.42 | MC |
| SRR8611900 | leaf | Non-inoculated | 2.28 | MC |
| SRR8611901 | leaf | Non-inoculated | 1.14 | MC |
| SRR8611902 | leaf | Non-inoculated | 1.68 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 3.36 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 2.93 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 2.92 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.66 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.41 | MC |
| SRR6502088 | leaf | control | 0.40 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 1.45 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 1.94 | MC |
| SRR6168979 | leaf | none (control) | 0.27 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.72 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.20 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.87 | MC |
| SRR8582888 | panicle | AM | 0.32 | MC |
| SRR8582889 | panicle | AM | 0.16 | MC |
| SRR4947496 | root | control | 2.20 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.26 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.28 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.48 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.59 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 2.17 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 1.50 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 4.51 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 6.22 | MC |
| SRR5126148 | root | "mock,1_day" | 0.55 | MC |
| SRR5126149 | root | "mock,1_day" | 1.47 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.88 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 1.11 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.81 | MC |
| SRR5126153 | root | "mock,7_days" | 1.15 | MC |
| SRR5126155 | root | "mock,7_days" | 1.27 | MC |
| SRR5126157 | root | "mock,7_days" | 3.64 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 1.87 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 1.71 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.63 | MC |
| SRR5126165 | root | "mock,14_days" | 1.48 | MC |
| SRR5126167 | root | "mock,14_days" | 1.22 | MC |
| SRR5126169 | root | "mock,14_days" | 1.47 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 1.71 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 1.16 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.74 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.29 | MC |
| SRR1213694 | root | wt | 1.77 | MC |
| SRR4947480 | root | control | 1.16 | MC |
| SRR4947481 | root | control | 2.35 | MC |
| SRR4947484 | root | Al | 1.29 | MC |
| SRR4947485 | root | Al | 1.36 | MC |
| SRR4947488 | root | control | 1.79 | MC |
| SRR4947489 | root | control | 1.74 | MC |
| SRR4947492 | root | Al | 1.32 | MC |
| SRR4947493 | root | Al | 1.63 | MC |
| SRR4947497 | root | control | 1.69 | MC |
| SRR4947499 | root | Al | 0.62 | MC |
| SRR4947500 | root | Al | 0.78 | MC |
| SRR4947501 | root | Al | 1.58 | MC |
| SRR4947504 | root | control | 1.56 | MC |
| SRR4947505 | root | control | 1.90 | MC |
| SRR4947508 | root | Al | 1.55 | MC |
| SRR4947509 | root | Al | 1.55 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.65 | MC |
| SRR6502092 | root | 100 mM NaCl | 1.21 | MC |
| SRR6502093 | root | 100 mM NaCl | 0.55 | MC |
| SRR6502094 | root | control | 0.73 | MC |
| SRR6502095 | root | control | 0.77 | MC |
| SRR6502104 | root | 100 mM NaCl | 0.52 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.44 | MC |
| SRR6502106 | root | control | 0.69 | MC |
| SRR6502107 | root | control | 0.40 | MC |
| SRR1740434 | root_differentiation_zone | wt | 0.36 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.37 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.36 | MC |
| SRR6441554 | seedling | wild_type | 0.53 | MC |
| SRR6441555 | seedling | wild_type | 0.29 | MC |
| SRR2154087 | seedling | wt | 0.43 | MC |
| SRR3098743 | seedling | wt | 0.32 | MC |
| SRR2857720 | seedling | drought_stress_1h | 0.78 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 2.73 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.93 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 2.47 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 5.95 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 10.68 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.97 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 4.39 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 1.82 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.89 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.29 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.21 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.34 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.45 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.64 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 0.31 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 1.08 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 0.51 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 0.97 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 0.66 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.31 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.42 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.57 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.94 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.38 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 2.51 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 2.31 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 2.57 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 2.73 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 3.77 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 3.53 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 2.02 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 2.90 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 1.88 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 2.42 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 2.93 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 2.59 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 2.05 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 2.49 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 3.13 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 2.51 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 2.23 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 2.12 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 2.61 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 2.37 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 1.66 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 1.82 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 2.64 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 1.80 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 1.43 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 1.25 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 0.89 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 1.00 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 2.39 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 1.64 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 1.18 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 1.95 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 3.59 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 4.51 | MC |